Cluster: HRGMv2_2671_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2671
- CGC Family ID: CGCFAM_07282
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2671_2 | HRGMv2_2671_2_75 | 82047 | 82700 | - | 2.A.115.2.8 |
| TF | HRGMv2_2671_2 | HRGMv2_2671_2_76 | 82726 | 83133 | - | MarR |
| TF | HRGMv2_2671_2 | HRGMv2_2671_2_77 | 83310 | 84002 | + | 0038753 |
| CAZyme | HRGMv2_2671_2 | HRGMv2_2671_2_78 | 83989 | 86901 | - | GH3 |
| TC | HRGMv2_2671_2 | HRGMv2_2671_2_79 | 86937 | 88325 | - | 2.A.66.1.28 |
| NULL(UNKNOWN) | HRGMv2_2671_2 | HRGMv2_2671_2_80 | 88455 | 88616 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2671_2 | HRGMv2_2671_2_81 | 88617 | 89456 | - | 8.A.5.1.4 |
Gene ID: HRGMv2_2671_2_75
Type: TC
Location: 82047 - 82700 (-)
Type: TC
Location: 82047 - 82700 (-)
Gene ID: HRGMv2_2671_2_76
Type: TF
Location: 82726 - 83133 (-)
Type: TF
Location: 82726 - 83133 (-)
Gene ID: HRGMv2_2671_2_77
Type: TF
Location: 83310 - 84002 (+)
Type: TF
Location: 83310 - 84002 (+)
Gene ID: HRGMv2_2671_2_78
Type: CAZyme
Location: 83989 - 86901 (-)
Type: CAZyme
Location: 83989 - 86901 (-)
Gene ID: HRGMv2_2671_2_79
Type: TC
Location: 86937 - 88325 (-)
Type: TC
Location: 86937 - 88325 (-)
Gene ID: HRGMv2_2671_2_80
Type:
Location: 88455 - 88616 (+)
Type:
Location: 88455 - 88616 (+)
Gene ID: HRGMv2_2671_2_81
Type: TC
Location: 88617 - 89456 (-)
Type: TC
Location: 88617 - 89456 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.