Cluster: HRGMv2_2671_CGC33
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2671
- CGC Family ID: CGCFAM_04065
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2671_30 | HRGMv2_2671_30_23 | 18192 | 18884 | + | 1.C.82.1.1 |
| NULL(UNKNOWN) | HRGMv2_2671_30 | HRGMv2_2671_30_24 | 19087 | 19749 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2671_30 | HRGMv2_2671_30_25 | 19799 | 20974 | - | GH130_1 |
| NULL(UNKNOWN) | HRGMv2_2671_30 | HRGMv2_2671_30_26 | 21110 | 21709 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2671_30 | HRGMv2_2671_30_27 | 21752 | 22318 | - | 1.A.22.1.3 |
| pfam | HRGMv2_2671_30 | HRGMv2_2671_30_28 | 22336 | 24477 | - | S1 | RNB | OB_RNB |
| TC | HRGMv2_2671_30 | HRGMv2_2671_30_29 | 25013 | 25642 | + | 2.A.87.1.3 |
Gene ID: HRGMv2_2671_30_23
Type: TC
Location: 18192 - 18884 (+)
Type: TC
Location: 18192 - 18884 (+)
Gene ID: HRGMv2_2671_30_24
Type:
Location: 19087 - 19749 (-)
Type:
Location: 19087 - 19749 (-)
Gene ID: HRGMv2_2671_30_25
Type: CAZyme
Location: 19799 - 20974 (-)
Type: CAZyme
Location: 19799 - 20974 (-)
Gene ID: HRGMv2_2671_30_26
Type:
Location: 21110 - 21709 (-)
Type:
Location: 21110 - 21709 (-)
Gene ID: HRGMv2_2671_30_27
Type: TC
Location: 21752 - 22318 (-)
Type: TC
Location: 21752 - 22318 (-)
Gene ID: HRGMv2_2671_30_28
Type: pfam
Location: 22336 - 24477 (-)
Type: pfam
Location: 22336 - 24477 (-)
Gene ID: HRGMv2_2671_30_29
Type: TC
Location: 25013 - 25642 (+)
Type: TC
Location: 25013 - 25642 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.