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Cluster: HRGMv2_2671_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2671_23 HRGMv2_2671_23_30 31846 32622 + 3.A.1.17.8
TC HRGMv2_2671_23 HRGMv2_2671_23_31 32619 33362 + 3.A.1.17.13
TC HRGMv2_2671_23 HRGMv2_2671_23_32 33364 34410 + 3.A.1.17.3
pfam HRGMv2_2671_23 HRGMv2_2671_23_33 34471 34881 - Pep_deformylase
CAZyme HRGMv2_2671_23 HRGMv2_2671_23_34 35059 36411 + GH43_35
TF HRGMv2_2671_23 HRGMv2_2671_23_35 36439 37233 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2671_23 HRGMv2_2671_23_36 37246 38427 + GH5_4
Gene ID: HRGMv2_2671_23_30
Type: TC
Location: 31846 - 32622 (+)
Gene ID: HRGMv2_2671_23_31
Type: TC
Location: 32619 - 33362 (+)
Gene ID: HRGMv2_2671_23_32
Type: TC
Location: 33364 - 34410 (+)
Gene ID: HRGMv2_2671_23_33
Type: pfam
Location: 34471 - 34881 (-)
Gene ID: HRGMv2_2671_23_34
Type: CAZyme
Location: 35059 - 36411 (+)
Gene ID: HRGMv2_2671_23_35
Type: TF
Location: 36439 - 37233 (+)
Gene ID: HRGMv2_2671_23_36
Type: CAZyme
Location: 37246 - 38427 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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