Cluster: HRGMv2_2671_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2671
- CGC Family ID: CGCFAM_07280
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2671_20 | HRGMv2_2671_20_27 | 31976 | 33715 | - | GH35 |
| CAZyme | HRGMv2_2671_20 | HRGMv2_2671_20_28 | 33734 | 36439 | - | GH59 |
| TF | HRGMv2_2671_20 | HRGMv2_2671_20_29 | 36577 | 37398 | - | HTH_AraC | HTH_AraC |
| TF | HRGMv2_2671_20 | HRGMv2_2671_20_30 | 37695 | 38558 | - | HTH_1 |
| TC | HRGMv2_2671_20 | HRGMv2_2671_20_31 | 38673 | 39752 | + | 2.A.98.1.4 |
Gene ID: HRGMv2_2671_20_27
Type: CAZyme
Location: 31976 - 33715 (-)
Type: CAZyme
Location: 31976 - 33715 (-)
Gene ID: HRGMv2_2671_20_28
Type: CAZyme
Location: 33734 - 36439 (-)
Type: CAZyme
Location: 33734 - 36439 (-)
Gene ID: HRGMv2_2671_20_29
Type: TF
Location: 36577 - 37398 (-)
Type: TF
Location: 36577 - 37398 (-)
Gene ID: HRGMv2_2671_20_30
Type: TF
Location: 37695 - 38558 (-)
Type: TF
Location: 37695 - 38558 (-)
Gene ID: HRGMv2_2671_20_31
Type: TC
Location: 38673 - 39752 (+)
Type: TC
Location: 38673 - 39752 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.