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Cluster: HRGMv2_2671_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2671_11 HRGMv2_2671_11_24 21177 22694 + GH77
CAZyme HRGMv2_2671_11 HRGMv2_2671_11_25 22711 25071 + GT35
TC HRGMv2_2671_11 HRGMv2_2671_11_26 25444 26754 + 3.A.1.1.27
TC HRGMv2_2671_11 HRGMv2_2671_11_27 27004 28500 + 3.A.1.1.27
TC HRGMv2_2671_11 HRGMv2_2671_11_28 28500 29375 + 3.A.1.1.27
TF HRGMv2_2671_11 HRGMv2_2671_11_29 29407 30438 + LacI
CAZyme HRGMv2_2671_11 HRGMv2_2671_11_30 30435 32096 + GH13_36
CAZyme HRGMv2_2671_11 HRGMv2_2671_11_31 32111 34015 + GH13_14
Gene ID: HRGMv2_2671_11_24
Type: CAZyme
Location: 21177 - 22694 (+)
Gene ID: HRGMv2_2671_11_25
Type: CAZyme
Location: 22711 - 25071 (+)
Gene ID: HRGMv2_2671_11_26
Type: TC
Location: 25444 - 26754 (+)
Gene ID: HRGMv2_2671_11_27
Type: TC
Location: 27004 - 28500 (+)
Gene ID: HRGMv2_2671_11_28
Type: TC
Location: 28500 - 29375 (+)
Gene ID: HRGMv2_2671_11_29
Type: TF
Location: 29407 - 30438 (+)
Gene ID: HRGMv2_2671_11_30
Type: CAZyme
Location: 30435 - 32096 (+)
Gene ID: HRGMv2_2671_11_31
Type: CAZyme
Location: 32111 - 34015 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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