Cluster: HRGMv2_2653_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2653
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2653_19 | HRGMv2_2653_19_11 | 15519 | 17372 | - | 3.D.1.5.1 |
| TC | HRGMv2_2653_19 | HRGMv2_2653_19_12 | 17375 | 17827 | - | 3.D.1.5.1 |
| pfam | HRGMv2_2653_19 | HRGMv2_2653_19_13 | 18312 | 19652 | - | NusB | Methyltr_RsmB-F | FtsJ |
| pfam | HRGMv2_2653_19 | HRGMv2_2653_19_14 | 19952 | 21976 | + | GreA_GreB | GreA_GreB_N |
| CAZyme | HRGMv2_2653_19 | HRGMv2_2653_19_15 | 22244 | 24634 | - | CBM67 | GH78 |
Gene ID: HRGMv2_2653_19_11
Type: TC
Location: 15519 - 17372 (-)
Type: TC
Location: 15519 - 17372 (-)
Gene ID: HRGMv2_2653_19_12
Type: TC
Location: 17375 - 17827 (-)
Type: TC
Location: 17375 - 17827 (-)
Gene ID: HRGMv2_2653_19_13
Type: pfam
Location: 18312 - 19652 (-)
Type: pfam
Location: 18312 - 19652 (-)
Gene ID: HRGMv2_2653_19_14
Type: pfam
Location: 19952 - 21976 (+)
Type: pfam
Location: 19952 - 21976 (+)
Gene ID: HRGMv2_2653_19_15
Type: CAZyme
Location: 22244 - 24634 (-)
Type: CAZyme
Location: 22244 - 24634 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
Merdousia
Species
Merdousia sp900545705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.