Cluster: HRGMv2_2653_CGC26
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2653
- CGC Family ID: CGCFAM_07055
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2653_9 | HRGMv2_2653_9_28 | 36373 | 37350 | + | GT2 |
| CAZyme | HRGMv2_2653_9 | HRGMv2_2653_9_29 | 37591 | 39792 | + | GH50 |
| pfam | HRGMv2_2653_9 | HRGMv2_2653_9_30 | 40127 | 42091 | - | Transketolase_N | Transket_pyr | Transketolase_C_1 |
| pfam | HRGMv2_2653_9 | HRGMv2_2653_9_31 | 42266 | 42844 | + | Poly_export | SLBB_2 |
| TC | HRGMv2_2653_9 | HRGMv2_2653_9_32 | 42910 | 45318 | + | 8.A.3.1.2 |
| CAZyme | HRGMv2_2653_9 | HRGMv2_2653_9_33 | 45600 | 47480 | + | GH39 |
| NULL(UNKNOWN) | HRGMv2_2653_9 | HRGMv2_2653_9_34 | 47642 | 48367 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2653_9 | HRGMv2_2653_9_35 | 48500 | 49471 | - | GT8 |
| TC | HRGMv2_2653_9 | HRGMv2_2653_9_36 | 49698 | 51290 | - | 3.B.1.1.2 |
| NULL(UNKNOWN) | HRGMv2_2653_9 | HRGMv2_2653_9_37 | 51312 | 51476 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2653_9 | HRGMv2_2653_9_38 | 51491 | 52819 | - | 2.A.45.2.2 |
| pfam | HRGMv2_2653_9 | HRGMv2_2653_9_39 | 53452 | 54207 | - | His_Phos_1 |
| CAZyme | HRGMv2_2653_9 | HRGMv2_2653_9_40 | 54507 | 56675 | - | GH36 |
Gene ID: HRGMv2_2653_9_28
Type: CAZyme
Location: 36373 - 37350 (+)
Type: CAZyme
Location: 36373 - 37350 (+)
Gene ID: HRGMv2_2653_9_29
Type: CAZyme
Location: 37591 - 39792 (+)
Type: CAZyme
Location: 37591 - 39792 (+)
Gene ID: HRGMv2_2653_9_30
Type: pfam
Location: 40127 - 42091 (-)
Type: pfam
Location: 40127 - 42091 (-)
Gene ID: HRGMv2_2653_9_31
Type: pfam
Location: 42266 - 42844 (+)
Type: pfam
Location: 42266 - 42844 (+)
Gene ID: HRGMv2_2653_9_32
Type: TC
Location: 42910 - 45318 (+)
Type: TC
Location: 42910 - 45318 (+)
Gene ID: HRGMv2_2653_9_33
Type: CAZyme
Location: 45600 - 47480 (+)
Type: CAZyme
Location: 45600 - 47480 (+)
Gene ID: HRGMv2_2653_9_34
Type:
Location: 47642 - 48367 (-)
Type:
Location: 47642 - 48367 (-)
Gene ID: HRGMv2_2653_9_35
Type: CAZyme
Location: 48500 - 49471 (-)
Type: CAZyme
Location: 48500 - 49471 (-)
Gene ID: HRGMv2_2653_9_36
Type: TC
Location: 49698 - 51290 (-)
Type: TC
Location: 49698 - 51290 (-)
Gene ID: HRGMv2_2653_9_37
Type:
Location: 51312 - 51476 (-)
Type:
Location: 51312 - 51476 (-)
Gene ID: HRGMv2_2653_9_38
Type: TC
Location: 51491 - 52819 (-)
Type: TC
Location: 51491 - 52819 (-)
Gene ID: HRGMv2_2653_9_39
Type: pfam
Location: 53452 - 54207 (-)
Type: pfam
Location: 53452 - 54207 (-)
Gene ID: HRGMv2_2653_9_40
Type: CAZyme
Location: 54507 - 56675 (-)
Type: CAZyme
Location: 54507 - 56675 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
Merdousia
Species
Merdousia sp900545705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.