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Cluster: HRGMv2_2653_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2653_2 HRGMv2_2653_2_218 265161 266486 + 3.A.5.2.2
NULL(UNKNOWN) HRGMv2_2653_2 HRGMv2_2653_2_219 266665 267615 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2653_2 HRGMv2_2653_2_220 267834 268994 + GH172
pfam HRGMv2_2653_2 HRGMv2_2653_2_221 269408 270343 - QRPTase_C | QRPTase_N
pfam HRGMv2_2653_2 HRGMv2_2653_2_222 270346 271110 - Inositol_P
TC HRGMv2_2653_2 HRGMv2_2653_2_223 271142 272815 - 4.C.1.1.4
pfam HRGMv2_2653_2 HRGMv2_2653_2_224 273036 274655 + Fumerase | Fumerase_C
pfam HRGMv2_2653_2 HRGMv2_2653_2_225 275449 276495 - RecA | ATPase | Rad51 | RecA_C
CAZyme HRGMv2_2653_2 HRGMv2_2653_2_226 276659 278368 + GH181
Gene ID: HRGMv2_2653_2_218
Type: TC
Location: 265161 - 266486 (+)
Gene ID: HRGMv2_2653_2_219
Type:
Location: 266665 - 267615 (-)
Gene ID: HRGMv2_2653_2_220
Type: CAZyme
Location: 267834 - 268994 (+)
Gene ID: HRGMv2_2653_2_221
Type: pfam
Location: 269408 - 270343 (-)
Gene ID: HRGMv2_2653_2_222
Type: pfam
Location: 270346 - 271110 (-)
Gene ID: HRGMv2_2653_2_223
Type: TC
Location: 271142 - 272815 (-)
Gene ID: HRGMv2_2653_2_224
Type: pfam
Location: 273036 - 274655 (+)
Gene ID: HRGMv2_2653_2_225
Type: pfam
Location: 275449 - 276495 (-)
Gene ID: HRGMv2_2653_2_226
Type: CAZyme
Location: 276659 - 278368 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2653_2_225 vegan > omnivore 1.05251 0.03451
HRGMv2_2653_2_225 vegetarian > omnivore 1.12251 0.02254

🧭 Explore Read Mapping of CGC

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