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Cluster: HRGMv2_2620_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2620_8 HRGMv2_2620_8_11 11597 16138 + PL1_2
CAZyme HRGMv2_2620_8 HRGMv2_2620_8_12 16178 19924 + PL1_2
TC HRGMv2_2620_8 HRGMv2_2620_8_13 20123 21157 + 3.A.1.1.10
TC HRGMv2_2620_8 HRGMv2_2620_8_14 21175 22068 + 3.A.1.1.9
NULL(UNKNOWN) HRGMv2_2620_8 HRGMv2_2620_8_15 22105 23847 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2620_8 HRGMv2_2620_8_16 24007 24957 + CE8
CAZyme HRGMv2_2620_8 HRGMv2_2620_8_17 25037 26515 + GH28
pfam HRGMv2_2620_8 HRGMv2_2620_8_18 26550 27920 + Mannitol_dh | Mannitol_dh_C
pfam HRGMv2_2620_8 HRGMv2_2620_8_19 27961 29376 + GD_AH_second | SAF | GD_AH_C
CAZyme HRGMv2_2620_8 HRGMv2_2620_8_20 29420 30958 + CBM91 | GH43_10
Gene ID: HRGMv2_2620_8_11
Type: CAZyme
Location: 11597 - 16138 (+)
Gene ID: HRGMv2_2620_8_12
Type: CAZyme
Location: 16178 - 19924 (+)
Gene ID: HRGMv2_2620_8_13
Type: TC
Location: 20123 - 21157 (+)
Gene ID: HRGMv2_2620_8_14
Type: TC
Location: 21175 - 22068 (+)
Gene ID: HRGMv2_2620_8_15
Type:
Location: 22105 - 23847 (+)
Gene ID: HRGMv2_2620_8_16
Type: CAZyme
Location: 24007 - 24957 (+)
Gene ID: HRGMv2_2620_8_17
Type: CAZyme
Location: 25037 - 26515 (+)
Gene ID: HRGMv2_2620_8_18
Type: pfam
Location: 26550 - 27920 (+)
Gene ID: HRGMv2_2620_8_19
Type: pfam
Location: 27961 - 29376 (+)
Gene ID: HRGMv2_2620_8_20
Type: CAZyme
Location: 29420 - 30958 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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