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Cluster: HRGMv2_2618_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2618_28 HRGMv2_2618_28_13 11066 11992 - CE4
pfam HRGMv2_2618_28 HRGMv2_2618_28_14 12131 13441 - AMP-binding | AMP-binding_C_2
CAZyme HRGMv2_2618_28 HRGMv2_2618_28_15 13880 15058 - GH88
CAZyme HRGMv2_2618_28 HRGMv2_2618_28_16 15081 16199 - GH88
TF HRGMv2_2618_28 HRGMv2_2618_28_17 16319 17173 + HTH_AraC | HTH_AraC
TC HRGMv2_2618_28 HRGMv2_2618_28_18 17170 18285 + 3.A.1.103.6
CAZyme HRGMv2_2618_28 HRGMv2_2618_28_19 18275 19333 + GT2
CAZyme HRGMv2_2618_28 HRGMv2_2618_28_20 19311 20366 + GT2
Gene ID: HRGMv2_2618_28_13
Type: CAZyme
Location: 11066 - 11992 (-)
Gene ID: HRGMv2_2618_28_14
Type: pfam
Location: 12131 - 13441 (-)
Gene ID: HRGMv2_2618_28_15
Type: CAZyme
Location: 13880 - 15058 (-)
Gene ID: HRGMv2_2618_28_16
Type: CAZyme
Location: 15081 - 16199 (-)
Gene ID: HRGMv2_2618_28_17
Type: TF
Location: 16319 - 17173 (+)
Gene ID: HRGMv2_2618_28_18
Type: TC
Location: 17170 - 18285 (+)
Gene ID: HRGMv2_2618_28_19
Type: CAZyme
Location: 18275 - 19333 (+)
Gene ID: HRGMv2_2618_28_20
Type: CAZyme
Location: 19311 - 20366 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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