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Cluster: HRGMv2_2618_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2618_22 HRGMv2_2618_22_20 15420 16802 + GH28
TC HRGMv2_2618_22 HRGMv2_2618_22_21 16818 18488 + 3.A.1.1.9
TC HRGMv2_2618_22 HRGMv2_2618_22_22 18507 19439 + 3.A.1.1.9
TC HRGMv2_2618_22 HRGMv2_2618_22_23 19454 20347 + 3.A.1.1.9
TC HRGMv2_2618_22 HRGMv2_2618_22_24 20448 21962 + 3.A.1.1.10
NULL(UNKNOWN) HRGMv2_2618_22 HRGMv2_2618_22_25 21988 24993 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2618_22 HRGMv2_2618_22_26 25003 27684 + GH28
NULL(UNKNOWN) HRGMv2_2618_22 HRGMv2_2618_22_27 27702 28334 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2618_22 HRGMv2_2618_22_28 28398 30872 + GH28
Gene ID: HRGMv2_2618_22_20
Type: CAZyme
Location: 15420 - 16802 (+)
Gene ID: HRGMv2_2618_22_21
Type: TC
Location: 16818 - 18488 (+)
Gene ID: HRGMv2_2618_22_22
Type: TC
Location: 18507 - 19439 (+)
Gene ID: HRGMv2_2618_22_23
Type: TC
Location: 19454 - 20347 (+)
Gene ID: HRGMv2_2618_22_24
Type: TC
Location: 20448 - 21962 (+)
Gene ID: HRGMv2_2618_22_25
Type:
Location: 21988 - 24993 (+)
Gene ID: HRGMv2_2618_22_26
Type: CAZyme
Location: 25003 - 27684 (+)
Gene ID: HRGMv2_2618_22_27
Type:
Location: 27702 - 28334 (+)
Gene ID: HRGMv2_2618_22_28
Type: CAZyme
Location: 28398 - 30872 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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