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Cluster: HRGMv2_2618_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2618_1 HRGMv2_2618_1_56 67356 68240 - 3.A.1.1.29
TC HRGMv2_2618_1 HRGMv2_2618_1_57 68266 69243 - 3.A.1.1.29
pfam HRGMv2_2618_1 HRGMv2_2618_1_58 69266 70408 - SBP_bac_1 | SBP_bac_8
TC HRGMv2_2618_1 HRGMv2_2618_1_59 70624 72423 + 8.A.59.2.1
TF HRGMv2_2618_1 HRGMv2_2618_1_60 72420 73994 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2618_1 HRGMv2_2618_1_61 74018 75022 - CE19
CAZyme HRGMv2_2618_1 HRGMv2_2618_1_62 75039 76790 - GH36
CAZyme HRGMv2_2618_1 HRGMv2_2618_1_63 76890 79238 - GH10
CAZyme HRGMv2_2618_1 HRGMv2_2618_1_64 79251 80888 - GH3
pfam HRGMv2_2618_1 HRGMv2_2618_1_65 80888 81733 - HAD_2
CAZyme HRGMv2_2618_1 HRGMv2_2618_1_66 81752 84034 - GH10
Gene ID: HRGMv2_2618_1_56
Type: TC
Location: 67356 - 68240 (-)
Gene ID: HRGMv2_2618_1_57
Type: TC
Location: 68266 - 69243 (-)
Gene ID: HRGMv2_2618_1_58
Type: pfam
Location: 69266 - 70408 (-)
Gene ID: HRGMv2_2618_1_59
Type: TC
Location: 70624 - 72423 (+)
Gene ID: HRGMv2_2618_1_60
Type: TF
Location: 72420 - 73994 (+)
Gene ID: HRGMv2_2618_1_61
Type: CAZyme
Location: 74018 - 75022 (-)
Gene ID: HRGMv2_2618_1_62
Type: CAZyme
Location: 75039 - 76790 (-)
Gene ID: HRGMv2_2618_1_63
Type: CAZyme
Location: 76890 - 79238 (-)
Gene ID: HRGMv2_2618_1_64
Type: CAZyme
Location: 79251 - 80888 (-)
Gene ID: HRGMv2_2618_1_65
Type: pfam
Location: 80888 - 81733 (-)
Gene ID: HRGMv2_2618_1_66
Type: CAZyme
Location: 81752 - 84034 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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