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Cluster: HRGMv2_2618_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2618_18 HRGMv2_2618_18_2 1099 2469 - 2.A.66.1.28
CAZyme HRGMv2_2618_18 HRGMv2_2618_18_3 2481 4808 - GH2
TF HRGMv2_2618_18 HRGMv2_2618_18_4 5027 5812 + HTH_AraC | HTH_AraC
pfam HRGMv2_2618_18 HRGMv2_2618_18_5 5860 6900 - Semialdhyde_dh | Semialdhyde_dhC | Semialdhyde_dhC_1
TC HRGMv2_2618_18 HRGMv2_2618_18_6 7185 8297 + 3.A.1.1.22
TC HRGMv2_2618_18 HRGMv2_2618_18_7 8486 11224 + 3.A.12.1.1
pfam HRGMv2_2618_18 HRGMv2_2618_18_8 11417 11692 + Bac_DNA_binding | HU-HIG
TC HRGMv2_2618_18 HRGMv2_2618_18_9 11750 13852 - 3.A.10.1.13
Gene ID: HRGMv2_2618_18_2
Type: TC
Location: 1099 - 2469 (-)
Gene ID: HRGMv2_2618_18_3
Type: CAZyme
Location: 2481 - 4808 (-)
Gene ID: HRGMv2_2618_18_4
Type: TF
Location: 5027 - 5812 (+)
Gene ID: HRGMv2_2618_18_5
Type: pfam
Location: 5860 - 6900 (-)
Gene ID: HRGMv2_2618_18_6
Type: TC
Location: 7185 - 8297 (+)
Gene ID: HRGMv2_2618_18_7
Type: TC
Location: 8486 - 11224 (+)
Gene ID: HRGMv2_2618_18_8
Type: pfam
Location: 11417 - 11692 (+)
Gene ID: HRGMv2_2618_18_9
Type: TC
Location: 11750 - 13852 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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