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Cluster: HRGMv2_2618_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2618_12 HRGMv2_2618_12_20 19398 20474 + GH179
pfam HRGMv2_2618_12 HRGMv2_2618_12_21 20477 21328 + AP_endonuc_2
pfam HRGMv2_2618_12 HRGMv2_2618_12_22 21352 22062 + Glucosamine_iso
CAZyme HRGMv2_2618_12 HRGMv2_2618_12_23 22092 23162 + CE9
TC HRGMv2_2618_12 HRGMv2_2618_12_24 23412 24755 + 2.A.66.1.28
pfam HRGMv2_2618_12 HRGMv2_2618_12_25 24834 26108 + PDZ | Radical_SAM | DUF512 | PDZ_2 | PDZ_6 | Radical_SAM_2
pfam HRGMv2_2618_12 HRGMv2_2618_12_26 26120 27442 + GTP_EFTU | GTP_EFTU | MMR_HSR1 | MMR_HSR1 | FeoB_N | FeoB_N | cobW | AIG1 | KH_dom-like
TC HRGMv2_2618_12 HRGMv2_2618_12_27 27449 28069 + 9.B.31.1.2
pfam HRGMv2_2618_12 HRGMv2_2618_12_28 28089 29105 + NAD_Gly3P_dh_N | ApbA | F420_oxidored | NAD_Gly3P_dh_C | GPD_NAD_C_bact
TF HRGMv2_2618_12 HRGMv2_2618_12_29 29131 29976 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2618_12 HRGMv2_2618_12_30 30128 33229 + GH106
Gene ID: HRGMv2_2618_12_20
Type: CAZyme
Location: 19398 - 20474 (+)
Gene ID: HRGMv2_2618_12_21
Type: pfam
Location: 20477 - 21328 (+)
Gene ID: HRGMv2_2618_12_22
Type: pfam
Location: 21352 - 22062 (+)
Gene ID: HRGMv2_2618_12_23
Type: CAZyme
Location: 22092 - 23162 (+)
Gene ID: HRGMv2_2618_12_24
Type: TC
Location: 23412 - 24755 (+)
Gene ID: HRGMv2_2618_12_25
Type: pfam
Location: 24834 - 26108 (+)
Gene ID: HRGMv2_2618_12_26
Type: pfam
Location: 26120 - 27442 (+)
Gene ID: HRGMv2_2618_12_27
Type: TC
Location: 27449 - 28069 (+)
Gene ID: HRGMv2_2618_12_28
Type: pfam
Location: 28089 - 29105 (+)
Gene ID: HRGMv2_2618_12_29
Type: TF
Location: 29131 - 29976 (-)
Gene ID: HRGMv2_2618_12_30
Type: CAZyme
Location: 30128 - 33229 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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