dbCAN Logo

Cluster: HRGMv2_2618_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2618_11 HRGMv2_2618_11_25 45274 46290 - 2.A.120.1.7
peptidase HRGMv2_2618_11 HRGMv2_2618_11_26 46429 47571 + S11.004
pfam HRGMv2_2618_11 HRGMv2_2618_11_27 47789 48562 + PseudoU_synth_2 | S4
TC HRGMv2_2618_11 HRGMv2_2618_11_28 48595 50124 + 3.B.1.1.5
pfam HRGMv2_2618_11 HRGMv2_2618_11_29 50146 50505 + OAD_gamma
TC HRGMv2_2618_11 HRGMv2_2618_11_30 50530 50907 + 3.B.1.1.3
TC HRGMv2_2618_11 HRGMv2_2618_11_31 50951 52225 + 3.B.1.1.3
TC HRGMv2_2618_11 HRGMv2_2618_11_32 52264 53661 + 3.B.1.1.6
CAZyme HRGMv2_2618_11 HRGMv2_2618_11_33 53715 55265 - GH32
Gene ID: HRGMv2_2618_11_25
Type: TC
Location: 45274 - 46290 (-)
Gene ID: HRGMv2_2618_11_26
Type: peptidase
Location: 46429 - 47571 (+)
Gene ID: HRGMv2_2618_11_27
Type: pfam
Location: 47789 - 48562 (+)
Gene ID: HRGMv2_2618_11_28
Type: TC
Location: 48595 - 50124 (+)
Gene ID: HRGMv2_2618_11_29
Type: pfam
Location: 50146 - 50505 (+)
Gene ID: HRGMv2_2618_11_30
Type: TC
Location: 50530 - 50907 (+)
Gene ID: HRGMv2_2618_11_31
Type: TC
Location: 50951 - 52225 (+)
Gene ID: HRGMv2_2618_11_32
Type: TC
Location: 52264 - 53661 (+)
Gene ID: HRGMv2_2618_11_33
Type: CAZyme
Location: 53715 - 55265 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List