Cluster: HRGMv2_2604_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2604
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2604_4 | HRGMv2_2604_4_15 | 20278 | 21333 | + | 3.A.1.2.9 |
| STP | HRGMv2_2604_4 | HRGMv2_2604_4_16 | 21461 | 23677 | + | EAL | GGDEF | dCache_1 |
| CAZyme | HRGMv2_2604_4 | HRGMv2_2604_4_17 | 23725 | 24795 | - | GH3 |
| CAZyme | HRGMv2_2604_4 | HRGMv2_2604_4_18 | 24806 | 25669 | - | GH43_17 |
| CAZyme | HRGMv2_2604_4 | HRGMv2_2604_4_19 | 25969 | 30063 | - | GH51_2 |
Gene ID: HRGMv2_2604_4_15
Type: TC
Location: 20278 - 21333 (+)
Type: TC
Location: 20278 - 21333 (+)
Gene ID: HRGMv2_2604_4_16
Type: STP
Location: 21461 - 23677 (+)
Type: STP
Location: 21461 - 23677 (+)
Gene ID: HRGMv2_2604_4_17
Type: CAZyme
Location: 23725 - 24795 (-)
Type: CAZyme
Location: 23725 - 24795 (-)
Gene ID: HRGMv2_2604_4_18
Type: CAZyme
Location: 24806 - 25669 (-)
Type: CAZyme
Location: 24806 - 25669 (-)
Gene ID: HRGMv2_2604_4_19
Type: CAZyme
Location: 25969 - 30063 (-)
Type: CAZyme
Location: 25969 - 30063 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_4_15 | vegan > omnivore | 1.08185 | 0.04430 |
| HRGMv2_2604_4_15 | vegetarian > omnivore | 1.39378 | 0.01061 |