Cluster: HRGMv2_2604_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- CGC Family ID: CGCFAM_03803
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2604_3 | HRGMv2_2604_3_54 | 56366 | 56911 | + | GH23 |
| TC | HRGMv2_2604_3 | HRGMv2_2604_3_55 | 56956 | 57579 | + | 2.A.115.2.14 |
| pfam | HRGMv2_2604_3 | HRGMv2_2604_3_56 | 57594 | 58406 | + | BacA |
| pfam | HRGMv2_2604_3 | HRGMv2_2604_3_57 | 58453 | 58926 | - | Pro_isomerase |
| TC | HRGMv2_2604_3 | HRGMv2_2604_3_58 | 58945 | 59898 | - | 3.D.1.8.1 |
Gene ID: HRGMv2_2604_3_54
Type: CAZyme
Location: 56366 - 56911 (+)
Type: CAZyme
Location: 56366 - 56911 (+)
Gene ID: HRGMv2_2604_3_55
Type: TC
Location: 56956 - 57579 (+)
Type: TC
Location: 56956 - 57579 (+)
Gene ID: HRGMv2_2604_3_56
Type: pfam
Location: 57594 - 58406 (+)
Type: pfam
Location: 57594 - 58406 (+)
Gene ID: HRGMv2_2604_3_57
Type: pfam
Location: 58453 - 58926 (-)
Type: pfam
Location: 58453 - 58926 (-)
Gene ID: HRGMv2_2604_3_58
Type: TC
Location: 58945 - 59898 (-)
Type: TC
Location: 58945 - 59898 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_3_55 | vegetarian > omnivore | 1.23140 | 0.01061 |
| HRGMv2_2604_3_55 | vegetarian > vegan | 1.72486 | 0.01618 |
| HRGMv2_2604_3_58 | vegetarian > omnivore | 1.66511 | 0.01061 |