Cluster: HRGMv2_2604_CGC34
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- CGC Family ID: CGCFAM_00085
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2604_82 | HRGMv2_2604_82_1 | 53 | 1909 | - | 9.B.67.1.1 |
| TC | HRGMv2_2604_82 | HRGMv2_2604_82_2 | 1914 | 3455 | - | 2.A.66.4.7 |
| CAZyme | HRGMv2_2604_82 | HRGMv2_2604_82_3 | 3452 | 5686 | - | GT4 |
| TC | HRGMv2_2604_82 | HRGMv2_2604_82_4 | 5893 | 6042 | + | 2.A.22.4.3 |
Gene ID: HRGMv2_2604_82_1
Type: TC
Location: 53 - 1909 (-)
Type: TC
Location: 53 - 1909 (-)
Gene ID: HRGMv2_2604_82_2
Type: TC
Location: 1914 - 3455 (-)
Type: TC
Location: 1914 - 3455 (-)
Gene ID: HRGMv2_2604_82_3
Type: CAZyme
Location: 3452 - 5686 (-)
Type: CAZyme
Location: 3452 - 5686 (-)
Gene ID: HRGMv2_2604_82_4
Type: TC
Location: 5893 - 6042 (+)
Type: TC
Location: 5893 - 6042 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_82_4 | vegetarian > omnivore | 2.19595 | 0.01061 |
| HRGMv2_2604_82_4 | vegetarian > vegan | 1.26523 | 0.01618 |