Cluster: HRGMv2_2604_CGC31
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2604_66 | HRGMv2_2604_66_5 | 3272 | 4996 | - | 2.A.58.2.2 |
| pfam | HRGMv2_2604_66 | HRGMv2_2604_66_6 | 5127 | 5600 | - | UDG |
| CAZyme | HRGMv2_2604_66 | HRGMv2_2604_66_7 | 5748 | 6674 | + | GH159 |
| TC | HRGMv2_2604_66 | HRGMv2_2604_66_8 | 6714 | 7559 | - | 3.A.11.2.3 |
Gene ID: HRGMv2_2604_66_5
Type: TC
Location: 3272 - 4996 (-)
Type: TC
Location: 3272 - 4996 (-)
Gene ID: HRGMv2_2604_66_6
Type: pfam
Location: 5127 - 5600 (-)
Type: pfam
Location: 5127 - 5600 (-)
Gene ID: HRGMv2_2604_66_7
Type: CAZyme
Location: 5748 - 6674 (+)
Type: CAZyme
Location: 5748 - 6674 (+)
Gene ID: HRGMv2_2604_66_8
Type: TC
Location: 6714 - 7559 (-)
Type: TC
Location: 6714 - 7559 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_66_7 | vegan > omnivore | 2.91504 | 0.02592 |
| HRGMv2_2604_66_7 | vegetarian > omnivore | 2.16292 | 0.01061 |