Cluster: HRGMv2_2604_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2604_64 | HRGMv2_2604_64_7 | 4598 | 6547 | + | GH73 |
| pfam | HRGMv2_2604_64 | HRGMv2_2604_64_8 | 6660 | 8129 | + | Polysacc_synt | Polysacc_synt_3 |
| pfam | HRGMv2_2604_64 | HRGMv2_2604_64_9 | 8213 | 8584 | + | ACT_7 |
| TC | HRGMv2_2604_64 | HRGMv2_2604_64_10 | 8590 | 9768 | + | 2.A.4.7.4 |
Gene ID: HRGMv2_2604_64_7
Type: CAZyme
Location: 4598 - 6547 (+)
Type: CAZyme
Location: 4598 - 6547 (+)
Gene ID: HRGMv2_2604_64_8
Type: pfam
Location: 6660 - 8129 (+)
Type: pfam
Location: 6660 - 8129 (+)
Gene ID: HRGMv2_2604_64_9
Type: pfam
Location: 8213 - 8584 (+)
Type: pfam
Location: 8213 - 8584 (+)
Gene ID: HRGMv2_2604_64_10
Type: TC
Location: 8590 - 9768 (+)
Type: TC
Location: 8590 - 9768 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_64_9 | vegetarian > omnivore | 1.66409 | 0.01061 |
| HRGMv2_2604_64_9 | vegetarian > vegan | 1.08689 | 0.01618 |