Cluster: HRGMv2_2604_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2604
- CGC Family ID: CGCFAM_00920
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2604_59 | HRGMv2_2604_59_6 | 6062 | 7105 | - | GT2 |
| CAZyme | HRGMv2_2604_59 | HRGMv2_2604_59_7 | 7259 | 8239 | + | GT2 |
| pfam | HRGMv2_2604_59 | HRGMv2_2604_59_8 | 8243 | 9226 | + | PS_pyruv_trans |
| pfam | HRGMv2_2604_59 | HRGMv2_2604_59_9 | 9337 | 10245 | + | NadA |
| TC | HRGMv2_2604_59 | HRGMv2_2604_59_10 | 10257 | 11528 | + | 3.D.10.1.4 |
Gene ID: HRGMv2_2604_59_6
Type: CAZyme
Location: 6062 - 7105 (-)
Type: CAZyme
Location: 6062 - 7105 (-)
Gene ID: HRGMv2_2604_59_7
Type: CAZyme
Location: 7259 - 8239 (+)
Type: CAZyme
Location: 7259 - 8239 (+)
Gene ID: HRGMv2_2604_59_8
Type: pfam
Location: 8243 - 9226 (+)
Type: pfam
Location: 8243 - 9226 (+)
Gene ID: HRGMv2_2604_59_9
Type: pfam
Location: 9337 - 10245 (+)
Type: pfam
Location: 9337 - 10245 (+)
Gene ID: HRGMv2_2604_59_10
Type: TC
Location: 10257 - 11528 (+)
Type: TC
Location: 10257 - 11528 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_59_6 | vegetarian > omnivore | 1.76802 | 0.01061 |
| HRGMv2_2604_59_6 | vegetarian > vegan | 1.30019 | 0.01618 |