Cluster: HRGMv2_2604_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- CGC Family ID: CGCFAM_00693
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2604_53 | HRGMv2_2604_53_2 | 2009 | 4690 | - | GH141 | GH141 |
| sulfatase | HRGMv2_2604_53 | HRGMv2_2604_53_3 | 4711 | 6849 | - | S1_50 |
| NULL(UNKNOWN) | HRGMv2_2604_53 | HRGMv2_2604_53_4 | 6849 | 9623 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2604_53 | HRGMv2_2604_53_5 | 9677 | 10567 | - | 3.A.1.1.29 |
| TC | HRGMv2_2604_53 | HRGMv2_2604_53_6 | 10583 | 11545 | - | 3.A.1.1.9 |
| TF | HRGMv2_2604_53 | HRGMv2_2604_53_7 | 11796 | 12815 | + | HTH_AraC |
| TC | HRGMv2_2604_53 | HRGMv2_2604_53_8 | 12841 | 14517 | + | 8.A.59.2.1 |
Gene ID: HRGMv2_2604_53_2
Type: CAZyme
Location: 2009 - 4690 (-)
Type: CAZyme
Location: 2009 - 4690 (-)
Gene ID: HRGMv2_2604_53_3
Type: sulfatase
Location: 4711 - 6849 (-)
Type: sulfatase
Location: 4711 - 6849 (-)
Gene ID: HRGMv2_2604_53_4
Type:
Location: 6849 - 9623 (-)
Type:
Location: 6849 - 9623 (-)
Gene ID: HRGMv2_2604_53_5
Type: TC
Location: 9677 - 10567 (-)
Type: TC
Location: 9677 - 10567 (-)
Gene ID: HRGMv2_2604_53_6
Type: TC
Location: 10583 - 11545 (-)
Type: TC
Location: 10583 - 11545 (-)
Gene ID: HRGMv2_2604_53_7
Type: TF
Location: 11796 - 12815 (+)
Type: TF
Location: 11796 - 12815 (+)
Gene ID: HRGMv2_2604_53_8
Type: TC
Location: 12841 - 14517 (+)
Type: TC
Location: 12841 - 14517 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.