Cluster: HRGMv2_2604_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2604_48 | HRGMv2_2604_48_6 | 7306 | 8415 | + | 3.A.1.1.26 |
| TC | HRGMv2_2604_48 | HRGMv2_2604_48_7 | 8510 | 9463 | + | 2.A.19.5.2 |
| pfam | HRGMv2_2604_48 | HRGMv2_2604_48_8 | 10246 | 11259 | - | DAHP_synth_1 | NeuB | DAHP_snth_FXD |
| pfam | HRGMv2_2604_48 | HRGMv2_2604_48_9 | 11416 | 11868 | + | dCMP_cyt_deam_1 | MafB19-deam |
| CAZyme | HRGMv2_2604_48 | HRGMv2_2604_48_10 | 11933 | 13654 | + | CE12 |
Gene ID: HRGMv2_2604_48_6
Type: TC
Location: 7306 - 8415 (+)
Type: TC
Location: 7306 - 8415 (+)
Gene ID: HRGMv2_2604_48_7
Type: TC
Location: 8510 - 9463 (+)
Type: TC
Location: 8510 - 9463 (+)
Gene ID: HRGMv2_2604_48_8
Type: pfam
Location: 10246 - 11259 (-)
Type: pfam
Location: 10246 - 11259 (-)
Gene ID: HRGMv2_2604_48_9
Type: pfam
Location: 11416 - 11868 (+)
Type: pfam
Location: 11416 - 11868 (+)
Gene ID: HRGMv2_2604_48_10
Type: CAZyme
Location: 11933 - 13654 (+)
Type: CAZyme
Location: 11933 - 13654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_48_9 | vegetarian > vegan | 1.23184 | 0.01618 |
| HRGMv2_2604_48_10 | vegetarian > omnivore | 1.07383 | 0.01061 |