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Cluster: HRGMv2_2604_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2604_46 HRGMv2_2604_46_1 3 6908 - CE12
pfam HRGMv2_2604_46 HRGMv2_2604_46_2 7055 8194 - UPF0020 | THUMP | RlmL_1st
pfam HRGMv2_2604_46 HRGMv2_2604_46_3 8203 10455 - S1 | RNB | OB_RNB | CSD2
TC HRGMv2_2604_46 HRGMv2_2604_46_4 10703 11998 + 2.A.6.4.2
TC HRGMv2_2604_46 HRGMv2_2604_46_5 11998 12918 + 2.A.6.4.2
TC HRGMv2_2604_46 HRGMv2_2604_46_6 13004 14362 - 2.A.66.1.33
STP HRGMv2_2604_46 HRGMv2_2604_46_7 14488 14853 - HMA
CAZyme HRGMv2_2604_46 HRGMv2_2604_46_8 15010 17304 - CBM61 | GH43_37
Gene ID: HRGMv2_2604_46_1
Type: CAZyme
Location: 3 - 6908 (-)
Gene ID: HRGMv2_2604_46_2
Type: pfam
Location: 7055 - 8194 (-)
Gene ID: HRGMv2_2604_46_3
Type: pfam
Location: 8203 - 10455 (-)
Gene ID: HRGMv2_2604_46_4
Type: TC
Location: 10703 - 11998 (+)
Gene ID: HRGMv2_2604_46_5
Type: TC
Location: 11998 - 12918 (+)
Gene ID: HRGMv2_2604_46_6
Type: TC
Location: 13004 - 14362 (-)
Gene ID: HRGMv2_2604_46_7
Type: STP
Location: 14488 - 14853 (-)
Gene ID: HRGMv2_2604_46_8
Type: CAZyme
Location: 15010 - 17304 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UBA1381
→
Genus
Hominilimicola
→
Species
Hominilimicola fabiformis

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2604_46_7 vegetarian > omnivore 1.24870 0.01061

🧭 Explore Read Mapping of CGC

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