Cluster: HRGMv2_2604_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2604
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2604_35 | HRGMv2_2604_35_3 | 2769 | 5246 | - | 3.A.12.1.1 |
| peptidase | HRGMv2_2604_35 | HRGMv2_2604_35_4 | 5353 | 6171 | - | M50.UPB |
| pfam | HRGMv2_2604_35 | HRGMv2_2604_35_5 | 6262 | 6726 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | HRGMv2_2604_35 | HRGMv2_2604_35_6 | 6867 | 10184 | - | GH146 |
| NULL(UNKNOWN) | HRGMv2_2604_35 | HRGMv2_2604_35_7 | 10332 | 10529 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2604_35 | HRGMv2_2604_35_8 | 10716 | 11597 | + | HTH_AraC |
| CAZyme | HRGMv2_2604_35 | HRGMv2_2604_35_9 | 11631 | 13718 | - | GH26 |
Gene ID: HRGMv2_2604_35_3
Type: TC
Location: 2769 - 5246 (-)
Type: TC
Location: 2769 - 5246 (-)
Gene ID: HRGMv2_2604_35_4
Type: peptidase
Location: 5353 - 6171 (-)
Type: peptidase
Location: 5353 - 6171 (-)
Gene ID: HRGMv2_2604_35_5
Type: pfam
Location: 6262 - 6726 (-)
Type: pfam
Location: 6262 - 6726 (-)
Gene ID: HRGMv2_2604_35_6
Type: CAZyme
Location: 6867 - 10184 (-)
Type: CAZyme
Location: 6867 - 10184 (-)
Gene ID: HRGMv2_2604_35_7
Type:
Location: 10332 - 10529 (-)
Type:
Location: 10332 - 10529 (-)
Gene ID: HRGMv2_2604_35_8
Type: TF
Location: 10716 - 11597 (+)
Type: TF
Location: 10716 - 11597 (+)
Gene ID: HRGMv2_2604_35_9
Type: CAZyme
Location: 11631 - 13718 (-)
Type: CAZyme
Location: 11631 - 13718 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_35_7 | vegan > omnivore | 1.28393 | 0.04430 |