Cluster: HRGMv2_2604_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2604_27 | HRGMv2_2604_27_10 | 8708 | 10117 | + | GH73 |
| pfam | HRGMv2_2604_27 | HRGMv2_2604_27_11 | 10166 | 13162 | - | SLH | SLH |
| TC | HRGMv2_2604_27 | HRGMv2_2604_27_12 | 13403 | 15397 | + | 3.A.25.2.1 |
| TF | HRGMv2_2604_27 | HRGMv2_2604_27_13 | 15372 | 15737 | + | HTH_3 |
| pfam | HRGMv2_2604_27 | HRGMv2_2604_27_14 | 15858 | 16160 | + | Ribosomal_S6 |
| TC | HRGMv2_2604_27 | HRGMv2_2604_27_15 | 16187 | 16675 | + | 3.A.7.19.1 |
Gene ID: HRGMv2_2604_27_10
Type: CAZyme
Location: 8708 - 10117 (+)
Type: CAZyme
Location: 8708 - 10117 (+)
Gene ID: HRGMv2_2604_27_11
Type: pfam
Location: 10166 - 13162 (-)
Type: pfam
Location: 10166 - 13162 (-)
Gene ID: HRGMv2_2604_27_12
Type: TC
Location: 13403 - 15397 (+)
Type: TC
Location: 13403 - 15397 (+)
Gene ID: HRGMv2_2604_27_13
Type: TF
Location: 15372 - 15737 (+)
Type: TF
Location: 15372 - 15737 (+)
Gene ID: HRGMv2_2604_27_14
Type: pfam
Location: 15858 - 16160 (+)
Type: pfam
Location: 15858 - 16160 (+)
Gene ID: HRGMv2_2604_27_15
Type: TC
Location: 16187 - 16675 (+)
Type: TC
Location: 16187 - 16675 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_27_10 | vegetarian > vegan | 1.21096 | 0.01618 |
| HRGMv2_2604_27_13 | vegetarian > vegan | 1.53153 | 0.01618 |
| HRGMv2_2604_27_15 | vegetarian > omnivore | 1.28214 | 0.01061 |
| HRGMv2_2604_27_15 | vegetarian > vegan | 1.10050 | 0.01618 |