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Cluster: HRGMv2_2604_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2604_23 HRGMv2_2604_23_7 6184 9129 - GH2
TC HRGMv2_2604_23 HRGMv2_2604_23_8 9435 9839 - 3.A.2.1.2
TC HRGMv2_2604_23 HRGMv2_2604_23_9 9836 11230 - 3.A.2.1.5
TC HRGMv2_2604_23 HRGMv2_2604_23_10 11246 12088 - 3.A.2.1.5
TC HRGMv2_2604_23 HRGMv2_2604_23_11 12102 13598 - 3.A.2.1.5
pfam HRGMv2_2604_23 HRGMv2_2604_23_12 13613 14137 - OSCP
pfam HRGMv2_2604_23 HRGMv2_2604_23_13 14147 14641 - ATP-synt_B
TC HRGMv2_2604_23 HRGMv2_2604_23_14 14667 14921 - 3.A.2.1.2
TC HRGMv2_2604_23 HRGMv2_2604_23_15 14974 15696 - 3.A.2.1.5
pfam HRGMv2_2604_23 HRGMv2_2604_23_16 15683 16081 - ATP-synt_I
TC HRGMv2_2604_23 HRGMv2_2604_23_17 16408 17940 - 2.A.68.1.2
TC HRGMv2_2604_23 HRGMv2_2604_23_18 18018 19037 - 3.D.1.8.1
NULL(UNKNOWN) HRGMv2_2604_23 HRGMv2_2604_23_19 18979 19881 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2604_23 HRGMv2_2604_23_20 20059 21699 + MCRA
CAZyme HRGMv2_2604_23 HRGMv2_2604_23_21 21849 22790 - GH43_26
CAZyme HRGMv2_2604_23 HRGMv2_2604_23_22 22863 23615 - CE4
NULL(UNKNOWN) HRGMv2_2604_23 HRGMv2_2604_23_23 23681 24196 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2604_23 HRGMv2_2604_23_24 24338 26914 + 3.A.3.2.21
TC HRGMv2_2604_23 HRGMv2_2604_23_25 26918 27148 + 9.A.8.1.6
TC HRGMv2_2604_23 HRGMv2_2604_23_26 27149 29047 + 9.A.8.1.6
Gene ID: HRGMv2_2604_23_7
Type: CAZyme
Location: 6184 - 9129 (-)
Gene ID: HRGMv2_2604_23_8
Type: TC
Location: 9435 - 9839 (-)
Gene ID: HRGMv2_2604_23_9
Type: TC
Location: 9836 - 11230 (-)
Gene ID: HRGMv2_2604_23_10
Type: TC
Location: 11246 - 12088 (-)
Gene ID: HRGMv2_2604_23_11
Type: TC
Location: 12102 - 13598 (-)
Gene ID: HRGMv2_2604_23_12
Type: pfam
Location: 13613 - 14137 (-)
Gene ID: HRGMv2_2604_23_13
Type: pfam
Location: 14147 - 14641 (-)
Gene ID: HRGMv2_2604_23_14
Type: TC
Location: 14667 - 14921 (-)
Gene ID: HRGMv2_2604_23_15
Type: TC
Location: 14974 - 15696 (-)
Gene ID: HRGMv2_2604_23_16
Type: pfam
Location: 15683 - 16081 (-)
Gene ID: HRGMv2_2604_23_17
Type: TC
Location: 16408 - 17940 (-)
Gene ID: HRGMv2_2604_23_18
Type: TC
Location: 18018 - 19037 (-)
Gene ID: HRGMv2_2604_23_19
Type:
Location: 18979 - 19881 (-)
Gene ID: HRGMv2_2604_23_20
Type: pfam
Location: 20059 - 21699 (+)
Gene ID: HRGMv2_2604_23_21
Type: CAZyme
Location: 21849 - 22790 (-)
Gene ID: HRGMv2_2604_23_22
Type: CAZyme
Location: 22863 - 23615 (-)
Gene ID: HRGMv2_2604_23_23
Type:
Location: 23681 - 24196 (-)
Gene ID: HRGMv2_2604_23_24
Type: TC
Location: 24338 - 26914 (+)
Gene ID: HRGMv2_2604_23_25
Type: TC
Location: 26918 - 27148 (+)
Gene ID: HRGMv2_2604_23_26
Type: TC
Location: 27149 - 29047 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UBA1381
→
Genus
Hominilimicola
→
Species
Hominilimicola fabiformis

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2604_23_10 vegetarian > vegan 1.62711 0.01618
HRGMv2_2604_23_12 vegetarian > omnivore 2.19906 0.01061
HRGMv2_2604_23_12 vegetarian > vegan 2.11064 0.01618
HRGMv2_2604_23_13 vegetarian > vegan 1.71879 0.01618
HRGMv2_2604_23_20 vegan > omnivore 1.21652 0.03558
HRGMv2_2604_23_22 vegan > omnivore 1.36470 0.03558
HRGMv2_2604_23_22 vegetarian > omnivore 1.44802 0.01061

🧭 Explore Read Mapping of CGC

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