Cluster: HRGMv2_2604_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- CGC Family ID: CGCFAM_00112
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2604_1 | HRGMv2_2604_1_124 | 111618 | 112346 | - | 3.A.1.131.1 |
| NULL(UNKNOWN) | HRGMv2_2604_1 | HRGMv2_2604_1_125 | 112374 | 113297 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2604_1 | HRGMv2_2604_1_126 | 113514 | 115028 | - | 3.A.1.1.9 |
| TC | HRGMv2_2604_1 | HRGMv2_2604_1_127 | 115137 | 116018 | - | 3.A.1.1.9 |
| TC | HRGMv2_2604_1 | HRGMv2_2604_1_128 | 116039 | 117025 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_2604_1 | HRGMv2_2604_1_129 | 117394 | 119544 | - | GH105 |
Gene ID: HRGMv2_2604_1_124
Type: TC
Location: 111618 - 112346 (-)
Type: TC
Location: 111618 - 112346 (-)
Gene ID: HRGMv2_2604_1_125
Type:
Location: 112374 - 113297 (-)
Type:
Location: 112374 - 113297 (-)
Gene ID: HRGMv2_2604_1_126
Type: TC
Location: 113514 - 115028 (-)
Type: TC
Location: 113514 - 115028 (-)
Gene ID: HRGMv2_2604_1_127
Type: TC
Location: 115137 - 116018 (-)
Type: TC
Location: 115137 - 116018 (-)
Gene ID: HRGMv2_2604_1_128
Type: TC
Location: 116039 - 117025 (-)
Type: TC
Location: 116039 - 117025 (-)
Gene ID: HRGMv2_2604_1_129
Type: CAZyme
Location: 117394 - 119544 (-)
Type: CAZyme
Location: 117394 - 119544 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_1_125 | vegan > omnivore | 2.84287 | 0.02592 |
| HRGMv2_2604_1_125 | vegetarian > omnivore | 1.34788 | 0.01061 |
| HRGMv2_2604_1_126 | vegetarian > omnivore | 1.70517 | 0.01061 |