Cluster: HRGMv2_2604_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- CGC Family ID: CGCFAM_09328
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2604_11 | HRGMv2_2604_11_10 | 9940 | 12669 | + | GH2 |
| pfam | HRGMv2_2604_11 | HRGMv2_2604_11_11 | 13038 | 13505 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| TC | HRGMv2_2604_11 | HRGMv2_2604_11_12 | 13562 | 14944 | - | 1.A.26.1.3 |
| pfam | HRGMv2_2604_11 | HRGMv2_2604_11_13 | 14988 | 16142 | - | Epimerase_2 |
| TC | HRGMv2_2604_11 | HRGMv2_2604_11_14 | 16159 | 17289 | - | 9.B.146.1.1 |
Gene ID: HRGMv2_2604_11_10
Type: CAZyme
Location: 9940 - 12669 (+)
Type: CAZyme
Location: 9940 - 12669 (+)
Gene ID: HRGMv2_2604_11_11
Type: pfam
Location: 13038 - 13505 (-)
Type: pfam
Location: 13038 - 13505 (-)
Gene ID: HRGMv2_2604_11_12
Type: TC
Location: 13562 - 14944 (-)
Type: TC
Location: 13562 - 14944 (-)
Gene ID: HRGMv2_2604_11_13
Type: pfam
Location: 14988 - 16142 (-)
Type: pfam
Location: 14988 - 16142 (-)
Gene ID: HRGMv2_2604_11_14
Type: TC
Location: 16159 - 17289 (-)
Type: TC
Location: 16159 - 17289 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_11_11 | vegan > omnivore | 1.75079 | 0.03558 |
| HRGMv2_2604_11_11 | vegetarian > omnivore | 1.56128 | 0.01061 |