Cluster: HRGMv2_2604_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2604
- CGC Family ID: CGCFAM_00681
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2604_10 | HRGMv2_2604_10_2 | 3424 | 5085 | + | 3.A.1.1.10 |
| TC | HRGMv2_2604_10 | HRGMv2_2604_10_3 | 5100 | 6056 | + | 3.A.1.1.10 |
| TC | HRGMv2_2604_10 | HRGMv2_2604_10_4 | 6071 | 6976 | + | 3.A.1.1.10 |
| CAZyme | HRGMv2_2604_10 | HRGMv2_2604_10_5 | 6986 | 10495 | + | GH39 |
Gene ID: HRGMv2_2604_10_2
Type: TC
Location: 3424 - 5085 (+)
Type: TC
Location: 3424 - 5085 (+)
Gene ID: HRGMv2_2604_10_3
Type: TC
Location: 5100 - 6056 (+)
Type: TC
Location: 5100 - 6056 (+)
Gene ID: HRGMv2_2604_10_4
Type: TC
Location: 6071 - 6976 (+)
Type: TC
Location: 6071 - 6976 (+)
Gene ID: HRGMv2_2604_10_5
Type: CAZyme
Location: 6986 - 10495 (+)
Type: CAZyme
Location: 6986 - 10495 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
Hominilimicola
Species
Hominilimicola fabiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2604_10_3 | vegan > omnivore | 1.59101 | 0.04430 |
| HRGMv2_2604_10_3 | vegetarian > omnivore | 2.11770 | 0.01061 |