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Cluster: HRGMv2_2580_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2580_6 HRGMv2_2580_6_1 159 917 - CE1
TF HRGMv2_2580_6 HRGMv2_2580_6_2 934 1890 - LacI
CAZyme HRGMv2_2580_6 HRGMv2_2580_6_3 1918 5217 - GH94
CAZyme HRGMv2_2580_6 HRGMv2_2580_6_4 5234 7381 - GH3
pfam HRGMv2_2580_6 HRGMv2_2580_6_5 7391 8152 - Exo_endo_phos
CAZyme HRGMv2_2580_6 HRGMv2_2580_6_6 8166 9050 - CE7
pfam HRGMv2_2580_6 HRGMv2_2580_6_7 9040 9636 - DUF624
NULL(UNKNOWN) HRGMv2_2580_6 HRGMv2_2580_6_8 9696 11297 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2580_6 HRGMv2_2580_6_9 11315 12196 - 3.A.1.1.29
TC HRGMv2_2580_6 HRGMv2_2580_6_10 12208 13119 - 3.A.1.1.29
Gene ID: HRGMv2_2580_6_1
Type: CAZyme
Location: 159 - 917 (-)
Gene ID: HRGMv2_2580_6_2
Type: TF
Location: 934 - 1890 (-)
Gene ID: HRGMv2_2580_6_3
Type: CAZyme
Location: 1918 - 5217 (-)
Gene ID: HRGMv2_2580_6_4
Type: CAZyme
Location: 5234 - 7381 (-)
Gene ID: HRGMv2_2580_6_5
Type: pfam
Location: 7391 - 8152 (-)
Gene ID: HRGMv2_2580_6_6
Type: CAZyme
Location: 8166 - 9050 (-)
Gene ID: HRGMv2_2580_6_7
Type: pfam
Location: 9040 - 9636 (-)
Gene ID: HRGMv2_2580_6_8
Type:
Location: 9696 - 11297 (-)
Gene ID: HRGMv2_2580_6_9
Type: TC
Location: 11315 - 12196 (-)
Gene ID: HRGMv2_2580_6_10
Type: TC
Location: 12208 - 13119 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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