Cluster: HRGMv2_2572_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2572
- CGC Family ID: CGCFAM_04138
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2572_14 | HRGMv2_2572_14_17 | 19365 | 20975 | - | GH13_31 |
| CAZyme | HRGMv2_2572_14 | HRGMv2_2572_14_18 | 21097 | 22542 | - | GH13_18 |
| TC | HRGMv2_2572_14 | HRGMv2_2572_14_19 | 22655 | 23488 | - | 3.A.1.1.28 |
| TC | HRGMv2_2572_14 | HRGMv2_2572_14_20 | 23502 | 24368 | - | 3.A.1.1.28 |
| TC | HRGMv2_2572_14 | HRGMv2_2572_14_21 | 24381 | 25652 | - | 3.A.1.1.28 |
| CAZyme | HRGMv2_2572_14 | HRGMv2_2572_14_22 | 25664 | 27826 | - | GH36 |
| TF | HRGMv2_2572_14 | HRGMv2_2572_14_23 | 27936 | 28769 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2572_14 | HRGMv2_2572_14_24 | 28815 | 29366 | - | CBM61 |
| CAZyme | HRGMv2_2572_14 | HRGMv2_2572_14_25 | 29490 | 29963 | - | GH53 |
| NULL(UNKNOWN) | HRGMv2_2572_14 | HRGMv2_2572_14_26 | 30294 | 30425 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2572_14 | HRGMv2_2572_14_27 | 30454 | 32127 | - | 4.A.3.1.1 |
| TC | HRGMv2_2572_14 | HRGMv2_2572_14_28 | 32217 | 32528 | - | 4.A.3.1.2 |
| CAZyme | HRGMv2_2572_14 | HRGMv2_2572_14_29 | 32541 | 33941 | - | GH1 |
Gene ID: HRGMv2_2572_14_17
Type: CAZyme
Location: 19365 - 20975 (-)
Type: CAZyme
Location: 19365 - 20975 (-)
Gene ID: HRGMv2_2572_14_18
Type: CAZyme
Location: 21097 - 22542 (-)
Type: CAZyme
Location: 21097 - 22542 (-)
Gene ID: HRGMv2_2572_14_19
Type: TC
Location: 22655 - 23488 (-)
Type: TC
Location: 22655 - 23488 (-)
Gene ID: HRGMv2_2572_14_20
Type: TC
Location: 23502 - 24368 (-)
Type: TC
Location: 23502 - 24368 (-)
Gene ID: HRGMv2_2572_14_21
Type: TC
Location: 24381 - 25652 (-)
Type: TC
Location: 24381 - 25652 (-)
Gene ID: HRGMv2_2572_14_22
Type: CAZyme
Location: 25664 - 27826 (-)
Type: CAZyme
Location: 25664 - 27826 (-)
Gene ID: HRGMv2_2572_14_23
Type: TF
Location: 27936 - 28769 (+)
Type: TF
Location: 27936 - 28769 (+)
Gene ID: HRGMv2_2572_14_24
Type: CAZyme
Location: 28815 - 29366 (-)
Type: CAZyme
Location: 28815 - 29366 (-)
Gene ID: HRGMv2_2572_14_25
Type: CAZyme
Location: 29490 - 29963 (-)
Type: CAZyme
Location: 29490 - 29963 (-)
Gene ID: HRGMv2_2572_14_26
Type:
Location: 30294 - 30425 (-)
Type:
Location: 30294 - 30425 (-)
Gene ID: HRGMv2_2572_14_27
Type: TC
Location: 30454 - 32127 (-)
Type: TC
Location: 30454 - 32127 (-)
Gene ID: HRGMv2_2572_14_28
Type: TC
Location: 32217 - 32528 (-)
Type: TC
Location: 32217 - 32528 (-)
Gene ID: HRGMv2_2572_14_29
Type: CAZyme
Location: 32541 - 33941 (-)
Type: CAZyme
Location: 32541 - 33941 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.