Cluster: HRGMv2_2572_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2572
- CGC Family ID: CGCFAM_08998
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2572_5 | HRGMv2_2572_5_32 | 28605 | 30011 | - | 2.A.3.3.22 |
| TF | HRGMv2_2572_5 | HRGMv2_2572_5_33 | 30267 | 31028 | - | HTH_6 |
| CAZyme | HRGMv2_2572_5 | HRGMv2_2572_5_34 | 31166 | 32848 | - | GH13_31 |
| TC | HRGMv2_2572_5 | HRGMv2_2572_5_35 | 32872 | 33294 | - | 4.A.6.1.19 |
| TC | HRGMv2_2572_5 | HRGMv2_2572_5_36 | 33302 | 34111 | - | 4.A.6.1.13 |
| TC | HRGMv2_2572_5 | HRGMv2_2572_5_37 | 34104 | 34898 | - | 4.A.6.1.13 |
| TC | HRGMv2_2572_5 | HRGMv2_2572_5_38 | 34910 | 35386 | - | 4.A.6.1.16 |
Gene ID: HRGMv2_2572_5_32
Type: TC
Location: 28605 - 30011 (-)
Type: TC
Location: 28605 - 30011 (-)
Gene ID: HRGMv2_2572_5_33
Type: TF
Location: 30267 - 31028 (-)
Type: TF
Location: 30267 - 31028 (-)
Gene ID: HRGMv2_2572_5_34
Type: CAZyme
Location: 31166 - 32848 (-)
Type: CAZyme
Location: 31166 - 32848 (-)
Gene ID: HRGMv2_2572_5_35
Type: TC
Location: 32872 - 33294 (-)
Type: TC
Location: 32872 - 33294 (-)
Gene ID: HRGMv2_2572_5_36
Type: TC
Location: 33302 - 34111 (-)
Type: TC
Location: 33302 - 34111 (-)
Gene ID: HRGMv2_2572_5_37
Type: TC
Location: 34104 - 34898 (-)
Type: TC
Location: 34104 - 34898 (-)
Gene ID: HRGMv2_2572_5_38
Type: TC
Location: 34910 - 35386 (-)
Type: TC
Location: 34910 - 35386 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.