Cluster: HRGMv2_2572_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2572
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2572_2 | HRGMv2_2572_2_65 | 69086 | 71317 | - | GT2 |
| CAZyme | HRGMv2_2572_2 | HRGMv2_2572_2_66 | 71307 | 72365 | - | GT2 |
| TC | HRGMv2_2572_2 | HRGMv2_2572_2_67 | 72358 | 73395 | - | 9.B.34.1.3 |
| pfam | HRGMv2_2572_2 | HRGMv2_2572_2_68 | 73588 | 74223 | - | Methyltransf_4 | Methyltransf_11 | Methyltransf_31 |
| pfam | HRGMv2_2572_2 | HRGMv2_2572_2_69 | 74220 | 75017 | - | APH |
| TC | HRGMv2_2572_2 | HRGMv2_2572_2_70 | 75075 | 76109 | - | 3.A.1.143.1 |
| TC | HRGMv2_2572_2 | HRGMv2_2572_2_71 | 76112 | 76807 | - | 3.A.1.143.1 |
Gene ID: HRGMv2_2572_2_65
Type: CAZyme
Location: 69086 - 71317 (-)
Type: CAZyme
Location: 69086 - 71317 (-)
Gene ID: HRGMv2_2572_2_66
Type: CAZyme
Location: 71307 - 72365 (-)
Type: CAZyme
Location: 71307 - 72365 (-)
Gene ID: HRGMv2_2572_2_67
Type: TC
Location: 72358 - 73395 (-)
Type: TC
Location: 72358 - 73395 (-)
Gene ID: HRGMv2_2572_2_68
Type: pfam
Location: 73588 - 74223 (-)
Type: pfam
Location: 73588 - 74223 (-)
Gene ID: HRGMv2_2572_2_69
Type: pfam
Location: 74220 - 75017 (-)
Type: pfam
Location: 74220 - 75017 (-)
Gene ID: HRGMv2_2572_2_70
Type: TC
Location: 75075 - 76109 (-)
Type: TC
Location: 75075 - 76109 (-)
Gene ID: HRGMv2_2572_2_71
Type: TC
Location: 76112 - 76807 (-)
Type: TC
Location: 76112 - 76807 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.