Cluster: HRGMv2_2572_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2572
- CGC Family ID: CGCFAM_06886
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2572_33 | HRGMv2_2572_33_12 | 10718 | 11185 | + | 3.A.1.28.2 |
| pfam | HRGMv2_2572_33 | HRGMv2_2572_33_13 | 11217 | 11786 | + | DUF436 |
| TC | HRGMv2_2572_33 | HRGMv2_2572_33_14 | 11817 | 12659 | - | 1.A.23.3.1 |
| NULL(UNKNOWN) | HRGMv2_2572_33 | HRGMv2_2572_33_15 | 12790 | 12954 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2572_33 | HRGMv2_2572_33_16 | 13548 | 13796 | + | HTH_6 |
| CAZyme | HRGMv2_2572_33 | HRGMv2_2572_33_17 | 14400 | 14858 | + | GH13_31 |
Gene ID: HRGMv2_2572_33_12
Type: TC
Location: 10718 - 11185 (+)
Type: TC
Location: 10718 - 11185 (+)
Gene ID: HRGMv2_2572_33_13
Type: pfam
Location: 11217 - 11786 (+)
Type: pfam
Location: 11217 - 11786 (+)
Gene ID: HRGMv2_2572_33_14
Type: TC
Location: 11817 - 12659 (-)
Type: TC
Location: 11817 - 12659 (-)
Gene ID: HRGMv2_2572_33_15
Type:
Location: 12790 - 12954 (+)
Type:
Location: 12790 - 12954 (+)
Gene ID: HRGMv2_2572_33_16
Type: TF
Location: 13548 - 13796 (+)
Type: TF
Location: 13548 - 13796 (+)
Gene ID: HRGMv2_2572_33_17
Type: CAZyme
Location: 14400 - 14858 (+)
Type: CAZyme
Location: 14400 - 14858 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.