Cluster: HRGMv2_2572_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2572
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2572_31 | HRGMv2_2572_31_9 | 6660 | 7814 | + | GT4 |
| CAZyme | HRGMv2_2572_31 | HRGMv2_2572_31_10 | 7804 | 8739 | + | GT2 |
| pfam | HRGMv2_2572_31 | HRGMv2_2572_31_11 | 8736 | 9542 | + | ABC2_membrane |
| TC | HRGMv2_2572_31 | HRGMv2_2572_31_12 | 9542 | 10780 | + | 3.A.1.103.4 |
| CAZyme | HRGMv2_2572_31 | HRGMv2_2572_31_13 | 10814 | 12232 | + | GT2 |
Gene ID: HRGMv2_2572_31_9
Type: CAZyme
Location: 6660 - 7814 (+)
Type: CAZyme
Location: 6660 - 7814 (+)
Gene ID: HRGMv2_2572_31_10
Type: CAZyme
Location: 7804 - 8739 (+)
Type: CAZyme
Location: 7804 - 8739 (+)
Gene ID: HRGMv2_2572_31_11
Type: pfam
Location: 8736 - 9542 (+)
Type: pfam
Location: 8736 - 9542 (+)
Gene ID: HRGMv2_2572_31_12
Type: TC
Location: 9542 - 10780 (+)
Type: TC
Location: 9542 - 10780 (+)
Gene ID: HRGMv2_2572_31_13
Type: CAZyme
Location: 10814 - 12232 (+)
Type: CAZyme
Location: 10814 - 12232 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.