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Cluster: HRGMv2_2552_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2552_11 HRGMv2_2552_11_22 23282 24583 + 9.B.102.1.15
STP HRGMv2_2552_11 HRGMv2_2552_11_23 24596 26302 + Pyr_redox_2 | Rhodanese
TC HRGMv2_2552_11 HRGMv2_2552_11_24 26322 27089 + 3.A.1.17.4
TC HRGMv2_2552_11 HRGMv2_2552_11_25 27089 28102 + 3.A.1.17.4
TC HRGMv2_2552_11 HRGMv2_2552_11_26 28089 28841 + 3.A.1.17.4
pfam HRGMv2_2552_11 HRGMv2_2552_11_27 29170 30000 + PRD | PRD | CAT_RBD
TC HRGMv2_2552_11 HRGMv2_2552_11_28 30091 31941 + 4.A.1.2.11
CAZyme HRGMv2_2552_11 HRGMv2_2552_11_29 31943 33394 + GH1
TC HRGMv2_2552_11 HRGMv2_2552_11_30 33496 34359 - 8.A.5.1.4
Gene ID: HRGMv2_2552_11_22
Type: TC
Location: 23282 - 24583 (+)
Gene ID: HRGMv2_2552_11_23
Type: STP
Location: 24596 - 26302 (+)
Gene ID: HRGMv2_2552_11_24
Type: TC
Location: 26322 - 27089 (+)
Gene ID: HRGMv2_2552_11_25
Type: TC
Location: 27089 - 28102 (+)
Gene ID: HRGMv2_2552_11_26
Type: TC
Location: 28089 - 28841 (+)
Gene ID: HRGMv2_2552_11_27
Type: pfam
Location: 29170 - 30000 (+)
Gene ID: HRGMv2_2552_11_28
Type: TC
Location: 30091 - 31941 (+)
Gene ID: HRGMv2_2552_11_29
Type: CAZyme
Location: 31943 - 33394 (+)
Gene ID: HRGMv2_2552_11_30
Type: TC
Location: 33496 - 34359 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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