Cluster: HRGMv2_2552_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2552
- CGC Family ID: CGCFAM_09231
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2552_7 | HRGMv2_2552_7_20 | 21638 | 22687 | - | 2.A.86.1.10 |
| pfam | HRGMv2_2552_7 | HRGMv2_2552_7_21 | 22698 | 23501 | - | DUF218 |
| NULL(UNKNOWN) | HRGMv2_2552_7 | HRGMv2_2552_7_22 | 23516 | 24940 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2552_7 | HRGMv2_2552_7_23 | 25059 | 26018 | - | 1.C.105.2.7 |
| STP | HRGMv2_2552_7 | HRGMv2_2552_7_24 | 26123 | 26617 | - | Sigma70_r4 |
| NULL(UNKNOWN) | HRGMv2_2552_7 | HRGMv2_2552_7_25 | 26783 | 27550 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2552_7 | HRGMv2_2552_7_26 | 27675 | 29402 | - | GH73 |
Gene ID: HRGMv2_2552_7_20
Type: TC
Location: 21638 - 22687 (-)
Type: TC
Location: 21638 - 22687 (-)
Gene ID: HRGMv2_2552_7_21
Type: pfam
Location: 22698 - 23501 (-)
Type: pfam
Location: 22698 - 23501 (-)
Gene ID: HRGMv2_2552_7_22
Type:
Location: 23516 - 24940 (-)
Type:
Location: 23516 - 24940 (-)
Gene ID: HRGMv2_2552_7_23
Type: TC
Location: 25059 - 26018 (-)
Type: TC
Location: 25059 - 26018 (-)
Gene ID: HRGMv2_2552_7_24
Type: STP
Location: 26123 - 26617 (-)
Type: STP
Location: 26123 - 26617 (-)
Gene ID: HRGMv2_2552_7_25
Type:
Location: 26783 - 27550 (-)
Type:
Location: 26783 - 27550 (-)
Gene ID: HRGMv2_2552_7_26
Type: CAZyme
Location: 27675 - 29402 (-)
Type: CAZyme
Location: 27675 - 29402 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Companilactobacillus
Species
Companilactobacillus formosensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.