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Cluster: HRGMv2_2552_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2552_6 HRGMv2_2552_6_20 18244 19038 + CE1
TC HRGMv2_2552_6 HRGMv2_2552_6_21 19051 20472 + 4.A.1.2.2
TF HRGMv2_2552_6 HRGMv2_2552_6_22 20550 21302 + HTH_DeoR
pfam HRGMv2_2552_6 HRGMv2_2552_6_23 21315 21941 + Hydrolase | HAD | Hydrolase_like | HAD_2
TC HRGMv2_2552_6 HRGMv2_2552_6_24 21969 23354 - 3.D.10.1.4
pfam HRGMv2_2552_6 HRGMv2_2552_6_25 23344 24741 - Lyase_1 | FumaraseC_C
CAZyme HRGMv2_2552_6 HRGMv2_2552_6_26 24806 26938 - GH65
TC HRGMv2_2552_6 HRGMv2_2552_6_27 27062 28591 - 2.A.118.1.7
pfam HRGMv2_2552_6 HRGMv2_2552_6_28 28800 29069 - Ribosomal_S14
TF HRGMv2_2552_6 HRGMv2_2552_6_29 29245 29910 + MarR
TC HRGMv2_2552_6 HRGMv2_2552_6_30 29930 31684 + 3.A.1.117.2
NULL(UNKNOWN) HRGMv2_2552_6 HRGMv2_2552_6_31 31882 34116 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2552_6 HRGMv2_2552_6_32 34169 35134 - LacI
CAZyme HRGMv2_2552_6 HRGMv2_2552_6_33 35308 36858 + GH140
TC HRGMv2_2552_6 HRGMv2_2552_6_34 36864 38255 + 2.A.2.3.3
pfam HRGMv2_2552_6 HRGMv2_2552_6_35 38374 39132 + BPL_C | BPL_LplA_LipB
TC HRGMv2_2552_6 HRGMv2_2552_6_36 39135 40364 - 2.A.55.3.2
Gene ID: HRGMv2_2552_6_20
Type: CAZyme
Location: 18244 - 19038 (+)
Gene ID: HRGMv2_2552_6_21
Type: TC
Location: 19051 - 20472 (+)
Gene ID: HRGMv2_2552_6_22
Type: TF
Location: 20550 - 21302 (+)
Gene ID: HRGMv2_2552_6_23
Type: pfam
Location: 21315 - 21941 (+)
Gene ID: HRGMv2_2552_6_24
Type: TC
Location: 21969 - 23354 (-)
Gene ID: HRGMv2_2552_6_25
Type: pfam
Location: 23344 - 24741 (-)
Gene ID: HRGMv2_2552_6_26
Type: CAZyme
Location: 24806 - 26938 (-)
Gene ID: HRGMv2_2552_6_27
Type: TC
Location: 27062 - 28591 (-)
Gene ID: HRGMv2_2552_6_28
Type: pfam
Location: 28800 - 29069 (-)
Gene ID: HRGMv2_2552_6_29
Type: TF
Location: 29245 - 29910 (+)
Gene ID: HRGMv2_2552_6_30
Type: TC
Location: 29930 - 31684 (+)
Gene ID: HRGMv2_2552_6_31
Type:
Location: 31882 - 34116 (+)
Gene ID: HRGMv2_2552_6_32
Type: TF
Location: 34169 - 35134 (-)
Gene ID: HRGMv2_2552_6_33
Type: CAZyme
Location: 35308 - 36858 (+)
Gene ID: HRGMv2_2552_6_34
Type: TC
Location: 36864 - 38255 (+)
Gene ID: HRGMv2_2552_6_35
Type: pfam
Location: 38374 - 39132 (+)
Gene ID: HRGMv2_2552_6_36
Type: TC
Location: 39135 - 40364 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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