Cluster: HRGMv2_2552_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2552
- CGC Family ID: CGCFAM_06134
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2552_3 | HRGMv2_2552_3_31 | 31630 | 32790 | - | GH8 |
| CAZyme | HRGMv2_2552_3 | HRGMv2_2552_3_32 | 32803 | 34101 | - | GT2 |
| STP | HRGMv2_2552_3 | HRGMv2_2552_3_33 | 34258 | 35124 | - | GGDEF |
| TC | HRGMv2_2552_3 | HRGMv2_2552_3_34 | 35305 | 36720 | - | 4.A.5.1.4 |
| pfam | HRGMv2_2552_3 | HRGMv2_2552_3_35 | 36751 | 37056 | - | PTS_IIB |
| TC | HRGMv2_2552_3 | HRGMv2_2552_3_36 | 37074 | 37586 | - | 4.A.5.1.6 |
Gene ID: HRGMv2_2552_3_31
Type: CAZyme
Location: 31630 - 32790 (-)
Type: CAZyme
Location: 31630 - 32790 (-)
Gene ID: HRGMv2_2552_3_32
Type: CAZyme
Location: 32803 - 34101 (-)
Type: CAZyme
Location: 32803 - 34101 (-)
Gene ID: HRGMv2_2552_3_33
Type: STP
Location: 34258 - 35124 (-)
Type: STP
Location: 34258 - 35124 (-)
Gene ID: HRGMv2_2552_3_34
Type: TC
Location: 35305 - 36720 (-)
Type: TC
Location: 35305 - 36720 (-)
Gene ID: HRGMv2_2552_3_35
Type: pfam
Location: 36751 - 37056 (-)
Type: pfam
Location: 36751 - 37056 (-)
Gene ID: HRGMv2_2552_3_36
Type: TC
Location: 37074 - 37586 (-)
Type: TC
Location: 37074 - 37586 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Companilactobacillus
Species
Companilactobacillus formosensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.