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Cluster: HRGMv2_2552_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2552_51 HRGMv2_2552_51_1 158 1288 - 9.B.34.1.4
TC HRGMv2_2552_51 HRGMv2_2552_51_2 1428 2558 - 9.B.34.1.4
pfam HRGMv2_2552_51 HRGMv2_2552_51_3 2680 3840 - Acetyltransf_9 | SCP2_2 | Acetyltransf_17
CAZyme HRGMv2_2552_51 HRGMv2_2552_51_4 3895 4980 - GH170
TC HRGMv2_2552_51 HRGMv2_2552_51_5 5002 6306 - 4.A.3.2.2
TF HRGMv2_2552_51 HRGMv2_2552_51_6 6443 7219 - HTH_6
CAZyme HRGMv2_2552_51 HRGMv2_2552_51_7 7359 8816 - GH1
CAZyme HRGMv2_2552_51 HRGMv2_2552_51_8 8841 10286 - GH1
TC HRGMv2_2552_51 HRGMv2_2552_51_9 10292 10627 - 4.A.3.2.8
TC HRGMv2_2552_51 HRGMv2_2552_51_10 10722 11105 - 4.A.3.2.4
Gene ID: HRGMv2_2552_51_1
Type: TC
Location: 158 - 1288 (-)
Gene ID: HRGMv2_2552_51_2
Type: TC
Location: 1428 - 2558 (-)
Gene ID: HRGMv2_2552_51_3
Type: pfam
Location: 2680 - 3840 (-)
Gene ID: HRGMv2_2552_51_4
Type: CAZyme
Location: 3895 - 4980 (-)
Gene ID: HRGMv2_2552_51_5
Type: TC
Location: 5002 - 6306 (-)
Gene ID: HRGMv2_2552_51_6
Type: TF
Location: 6443 - 7219 (-)
Gene ID: HRGMv2_2552_51_7
Type: CAZyme
Location: 7359 - 8816 (-)
Gene ID: HRGMv2_2552_51_8
Type: CAZyme
Location: 8841 - 10286 (-)
Gene ID: HRGMv2_2552_51_9
Type: TC
Location: 10292 - 10627 (-)
Gene ID: HRGMv2_2552_51_10
Type: TC
Location: 10722 - 11105 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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