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Cluster: HRGMv2_2552_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2552_49 HRGMv2_2552_49_6 7331 8215 + 2.A.7.5.2
pfam HRGMv2_2552_49 HRGMv2_2552_49_7 8469 9038 - Lysine_decarbox | LDcluster4
pfam HRGMv2_2552_49 HRGMv2_2552_49_8 9051 9878 - Phage_int_SAM_1
TC HRGMv2_2552_49 HRGMv2_2552_49_9 9960 10439 - 4.A.1.1.1
TF HRGMv2_2552_49 HRGMv2_2552_49_10 10442 11296 - HTH_6
TC HRGMv2_2552_49 HRGMv2_2552_49_11 11300 12772 - 4.A.1.2.7
STP HRGMv2_2552_49 HRGMv2_2552_49_12 12776 13672 - SIS
CAZyme HRGMv2_2552_49 HRGMv2_2552_49_13 13677 14195 - GH170
Gene ID: HRGMv2_2552_49_6
Type: TC
Location: 7331 - 8215 (+)
Gene ID: HRGMv2_2552_49_7
Type: pfam
Location: 8469 - 9038 (-)
Gene ID: HRGMv2_2552_49_8
Type: pfam
Location: 9051 - 9878 (-)
Gene ID: HRGMv2_2552_49_9
Type: TC
Location: 9960 - 10439 (-)
Gene ID: HRGMv2_2552_49_10
Type: TF
Location: 10442 - 11296 (-)
Gene ID: HRGMv2_2552_49_11
Type: TC
Location: 11300 - 12772 (-)
Gene ID: HRGMv2_2552_49_12
Type: STP
Location: 12776 - 13672 (-)
Gene ID: HRGMv2_2552_49_13
Type: CAZyme
Location: 13677 - 14195 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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