Cluster: HRGMv2_2552_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2552
- CGC Family ID: CGCFAM_02702
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_2 | 998 | 2197 | - | 2.A.1.68.1 |
| peptidase | HRGMv2_2552_2 | HRGMv2_2552_2_3 | 2222 | 3109 | - | S09.UNW |
| TF | HRGMv2_2552_2 | HRGMv2_2552_2_4 | 3188 | 4069 | - | HTH_AraC |
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_5 | 4228 | 6987 | - | 3.A.23.1.1 |
| STP | HRGMv2_2552_2 | HRGMv2_2552_2_6 | 7073 | 8044 | - | SIS |
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_7 | 8150 | 8989 | - | 4.A.6.1.19 |
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_8 | 9006 | 9776 | - | 4.A.6.1.19 |
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_9 | 9793 | 10263 | - | 4.A.6.1.19 |
| pfam | HRGMv2_2552_2 | HRGMv2_2552_2_10 | 10247 | 10675 | - | EIIA-man |
| CAZyme | HRGMv2_2552_2 | HRGMv2_2552_2_11 | 10881 | 12551 | - | GH13_31 |
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_12 | 12551 | 13378 | - | 4.A.6.1.19 |
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_13 | 13398 | 14225 | - | 4.A.6.1.19 |
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_14 | 14254 | 14745 | - | 4.A.6.1.19 |
| TC | HRGMv2_2552_2 | HRGMv2_2552_2_15 | 14758 | 15183 | - | 4.A.6.1.19 |
Gene ID: HRGMv2_2552_2_2
Type: TC
Location: 998 - 2197 (-)
Type: TC
Location: 998 - 2197 (-)
Gene ID: HRGMv2_2552_2_3
Type: peptidase
Location: 2222 - 3109 (-)
Type: peptidase
Location: 2222 - 3109 (-)
Gene ID: HRGMv2_2552_2_4
Type: TF
Location: 3188 - 4069 (-)
Type: TF
Location: 3188 - 4069 (-)
Gene ID: HRGMv2_2552_2_5
Type: TC
Location: 4228 - 6987 (-)
Type: TC
Location: 4228 - 6987 (-)
Gene ID: HRGMv2_2552_2_6
Type: STP
Location: 7073 - 8044 (-)
Type: STP
Location: 7073 - 8044 (-)
Gene ID: HRGMv2_2552_2_7
Type: TC
Location: 8150 - 8989 (-)
Type: TC
Location: 8150 - 8989 (-)
Gene ID: HRGMv2_2552_2_8
Type: TC
Location: 9006 - 9776 (-)
Type: TC
Location: 9006 - 9776 (-)
Gene ID: HRGMv2_2552_2_9
Type: TC
Location: 9793 - 10263 (-)
Type: TC
Location: 9793 - 10263 (-)
Gene ID: HRGMv2_2552_2_10
Type: pfam
Location: 10247 - 10675 (-)
Type: pfam
Location: 10247 - 10675 (-)
Gene ID: HRGMv2_2552_2_11
Type: CAZyme
Location: 10881 - 12551 (-)
Type: CAZyme
Location: 10881 - 12551 (-)
Gene ID: HRGMv2_2552_2_12
Type: TC
Location: 12551 - 13378 (-)
Type: TC
Location: 12551 - 13378 (-)
Gene ID: HRGMv2_2552_2_13
Type: TC
Location: 13398 - 14225 (-)
Type: TC
Location: 13398 - 14225 (-)
Gene ID: HRGMv2_2552_2_14
Type: TC
Location: 14254 - 14745 (-)
Type: TC
Location: 14254 - 14745 (-)
Gene ID: HRGMv2_2552_2_15
Type: TC
Location: 14758 - 15183 (-)
Type: TC
Location: 14758 - 15183 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Companilactobacillus
Species
Companilactobacillus formosensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.