Cluster: HRGMv2_2533_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2533
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2533_13 | HRGMv2_2533_13_4 | 3026 | 3430 | - | 4.A.6.1.18 |
| TC | HRGMv2_2533_13 | HRGMv2_2533_13_5 | 3434 | 4255 | - | 4.A.6.1.18 |
| TC | HRGMv2_2533_13 | HRGMv2_2533_13_6 | 4242 | 5147 | - | 4.A.6.1.18 |
| TC | HRGMv2_2533_13 | HRGMv2_2533_13_7 | 5174 | 5650 | - | 4.A.6.1.18 |
| CAZyme | HRGMv2_2533_13 | HRGMv2_2533_13_8 | 5647 | 7434 | - | GH35 |
| TF | HRGMv2_2533_13 | HRGMv2_2533_13_9 | 7753 | 8469 | + | GntR |
| CAZyme | HRGMv2_2533_13 | HRGMv2_2533_13_10 | 8782 | 12822 | + | GH20 | GH20 |
Gene ID: HRGMv2_2533_13_4
Type: TC
Location: 3026 - 3430 (-)
Type: TC
Location: 3026 - 3430 (-)
Gene ID: HRGMv2_2533_13_5
Type: TC
Location: 3434 - 4255 (-)
Type: TC
Location: 3434 - 4255 (-)
Gene ID: HRGMv2_2533_13_6
Type: TC
Location: 4242 - 5147 (-)
Type: TC
Location: 4242 - 5147 (-)
Gene ID: HRGMv2_2533_13_7
Type: TC
Location: 5174 - 5650 (-)
Type: TC
Location: 5174 - 5650 (-)
Gene ID: HRGMv2_2533_13_8
Type: CAZyme
Location: 5647 - 7434 (-)
Type: CAZyme
Location: 5647 - 7434 (-)
Gene ID: HRGMv2_2533_13_9
Type: TF
Location: 7753 - 8469 (+)
Type: TF
Location: 7753 - 8469 (+)
Gene ID: HRGMv2_2533_13_10
Type: CAZyme
Location: 8782 - 12822 (+)
Type: CAZyme
Location: 8782 - 12822 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus mitis_CY
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.