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Cluster: HRGMv2_2533_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2533_3 HRGMv2_2533_3_9 13893 15479 - GT2 | GT52
pfam HRGMv2_2533_3 HRGMv2_2533_3_10 15761 17029 - DltD
pfam HRGMv2_2533_3 HRGMv2_2533_3_11 17022 17261 - PP-binding
TC HRGMv2_2533_3 HRGMv2_2533_3_12 17275 18519 - 2.A.50.2.1
TC HRGMv2_2533_3 HRGMv2_2533_3_13 18516 20066 - 4.C.1.1.7
pfam HRGMv2_2533_3 HRGMv2_2533_3_14 20529 21707 - MFS_1
TC HRGMv2_2533_3 HRGMv2_2533_3_15 21919 23496 - 3.A.1.123.1
NULL(UNKNOWN) HRGMv2_2533_3 HRGMv2_2533_3_16 23617 23844 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2533_3 HRGMv2_2533_3_17 23854 24717 - HTH_3
TC HRGMv2_2533_3 HRGMv2_2533_3_18 24862 25566 - 1.A.8.2.6
Gene ID: HRGMv2_2533_3_9
Type: CAZyme
Location: 13893 - 15479 (-)
Gene ID: HRGMv2_2533_3_10
Type: pfam
Location: 15761 - 17029 (-)
Gene ID: HRGMv2_2533_3_11
Type: pfam
Location: 17022 - 17261 (-)
Gene ID: HRGMv2_2533_3_12
Type: TC
Location: 17275 - 18519 (-)
Gene ID: HRGMv2_2533_3_13
Type: TC
Location: 18516 - 20066 (-)
Gene ID: HRGMv2_2533_3_14
Type: pfam
Location: 20529 - 21707 (-)
Gene ID: HRGMv2_2533_3_15
Type: TC
Location: 21919 - 23496 (-)
Gene ID: HRGMv2_2533_3_16
Type:
Location: 23617 - 23844 (-)
Gene ID: HRGMv2_2533_3_17
Type: TF
Location: 23854 - 24717 (-)
Gene ID: HRGMv2_2533_3_18
Type: TC
Location: 24862 - 25566 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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