Cluster: HRGMv2_2533_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2533
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2533_57 | HRGMv2_2533_57_3 | 1738 | 2421 | + | 3.A.1.122.14 |
| TC | HRGMv2_2533_57 | HRGMv2_2533_57_4 | 2432 | 3691 | + | 3.A.1.122.13 |
| pfam | HRGMv2_2533_57 | HRGMv2_2533_57_5 | 3868 | 4878 | + | Gp_dh_N | Gp_dh_C |
| pfam | HRGMv2_2533_57 | HRGMv2_2533_57_6 | 4947 | 5822 | - | PseudoU_synth_2 |
| CAZyme | HRGMv2_2533_57 | HRGMv2_2533_57_7 | 5909 | 8104 | + | GT51 |
Gene ID: HRGMv2_2533_57_3
Type: TC
Location: 1738 - 2421 (+)
Type: TC
Location: 1738 - 2421 (+)
Gene ID: HRGMv2_2533_57_4
Type: TC
Location: 2432 - 3691 (+)
Type: TC
Location: 2432 - 3691 (+)
Gene ID: HRGMv2_2533_57_5
Type: pfam
Location: 3868 - 4878 (+)
Type: pfam
Location: 3868 - 4878 (+)
Gene ID: HRGMv2_2533_57_6
Type: pfam
Location: 4947 - 5822 (-)
Type: pfam
Location: 4947 - 5822 (-)
Gene ID: HRGMv2_2533_57_7
Type: CAZyme
Location: 5909 - 8104 (+)
Type: CAZyme
Location: 5909 - 8104 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus mitis_CY
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.