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Cluster: HRGMv2_2533_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2533_28 HRGMv2_2533_28_1 1 1332 + CBM71
CAZyme HRGMv2_2533_28 HRGMv2_2533_28_2 1334 3016 + GH29
CAZyme HRGMv2_2533_28 HRGMv2_2533_28_3 3062 5146 - GH92
CAZyme HRGMv2_2533_28 HRGMv2_2533_28_4 5317 6597 + GH125
CAZyme HRGMv2_2533_28 HRGMv2_2533_28_5 6808 9453 + GH38
pfam HRGMv2_2533_28 HRGMv2_2533_28_6 9538 10407 + ROK
CAZyme HRGMv2_2533_28 HRGMv2_2533_28_7 10401 12281 + GH20
TC HRGMv2_2533_28 HRGMv2_2533_28_8 12492 13421 + 3.A.1.1.10
TC HRGMv2_2533_28 HRGMv2_2533_28_9 13435 14358 + 3.A.1.1.29
Gene ID: HRGMv2_2533_28_1
Type: CAZyme
Location: 1 - 1332 (+)
Gene ID: HRGMv2_2533_28_2
Type: CAZyme
Location: 1334 - 3016 (+)
Gene ID: HRGMv2_2533_28_3
Type: CAZyme
Location: 3062 - 5146 (-)
Gene ID: HRGMv2_2533_28_4
Type: CAZyme
Location: 5317 - 6597 (+)
Gene ID: HRGMv2_2533_28_5
Type: CAZyme
Location: 6808 - 9453 (+)
Gene ID: HRGMv2_2533_28_6
Type: pfam
Location: 9538 - 10407 (+)
Gene ID: HRGMv2_2533_28_7
Type: CAZyme
Location: 10401 - 12281 (+)
Gene ID: HRGMv2_2533_28_8
Type: TC
Location: 12492 - 13421 (+)
Gene ID: HRGMv2_2533_28_9
Type: TC
Location: 13435 - 14358 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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