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Cluster: HRGMv2_2533_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2533_1 HRGMv2_2533_1_2 398 1378 + 9.B.146.1.6
NULL(UNKNOWN) HRGMv2_2533_1 HRGMv2_2533_1_3 1546 1635 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2533_1 HRGMv2_2533_1_4 1718 3823 + 3.A.9.1.2
pfam HRGMv2_2533_1 HRGMv2_2533_1_5 3884 4366 - LuxS
pfam HRGMv2_2533_1 HRGMv2_2533_1_6 4461 5945 - DUF1846 | DUF1846_C
CAZyme HRGMv2_2533_1 HRGMv2_2533_1_7 6098 7705 + GH13_31
TC HRGMv2_2533_1 HRGMv2_2533_1_8 7901 9859 + 3.A.1.5.19
pfam HRGMv2_2533_1 HRGMv2_2533_1_9 10049 11494 + DNA_PPF | LytR_cpsA_psr
pfam HRGMv2_2533_1 HRGMv2_2533_1_10 11501 12232 + CpsB_CapC
TC HRGMv2_2533_1 HRGMv2_2533_1_11 12241 12933 + 8.A.3.2.3
TC HRGMv2_2533_1 HRGMv2_2533_1_12 12944 13648 + 8.A.3.2.2
TC HRGMv2_2533_1 HRGMv2_2533_1_13 13672 15021 + 9.B.18.1.2
CAZyme HRGMv2_2533_1 HRGMv2_2533_1_14 15056 16228 + GT4
CAZyme HRGMv2_2533_1 HRGMv2_2533_1_15 16225 17508 + GT4
pfam HRGMv2_2533_1 HRGMv2_2533_1_16 17486 18175 + Hexapep | Hexapep_2
pfam HRGMv2_2533_1 HRGMv2_2533_1_17 18395 19363 + DUF6625
CAZyme HRGMv2_2533_1 HRGMv2_2533_1_18 19360 20430 + GT2
NULL(UNKNOWN) HRGMv2_2533_1 HRGMv2_2533_1_19 20462 21613 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2533_1 HRGMv2_2533_1_20 21610 23034 + 2.A.66.2.16
pfam HRGMv2_2533_1 HRGMv2_2533_1_21 23036 24148 + Amino_oxidase | GLF | NAD_binding_8
pfam HRGMv2_2533_1 HRGMv2_2533_1_22 24138 25127 + Stealth_CR2 | Stealth_CR1
CAZyme HRGMv2_2533_1 HRGMv2_2533_1_23 25138 26193 + GT113
Gene ID: HRGMv2_2533_1_2
Type: TC
Location: 398 - 1378 (+)
Gene ID: HRGMv2_2533_1_3
Type:
Location: 1546 - 1635 (+)
Gene ID: HRGMv2_2533_1_4
Type: TC
Location: 1718 - 3823 (+)
Gene ID: HRGMv2_2533_1_5
Type: pfam
Location: 3884 - 4366 (-)
Gene ID: HRGMv2_2533_1_6
Type: pfam
Location: 4461 - 5945 (-)
Gene ID: HRGMv2_2533_1_7
Type: CAZyme
Location: 6098 - 7705 (+)
Gene ID: HRGMv2_2533_1_8
Type: TC
Location: 7901 - 9859 (+)
Gene ID: HRGMv2_2533_1_9
Type: pfam
Location: 10049 - 11494 (+)
Gene ID: HRGMv2_2533_1_10
Type: pfam
Location: 11501 - 12232 (+)
Gene ID: HRGMv2_2533_1_11
Type: TC
Location: 12241 - 12933 (+)
Gene ID: HRGMv2_2533_1_12
Type: TC
Location: 12944 - 13648 (+)
Gene ID: HRGMv2_2533_1_13
Type: TC
Location: 13672 - 15021 (+)
Gene ID: HRGMv2_2533_1_14
Type: CAZyme
Location: 15056 - 16228 (+)
Gene ID: HRGMv2_2533_1_15
Type: CAZyme
Location: 16225 - 17508 (+)
Gene ID: HRGMv2_2533_1_16
Type: pfam
Location: 17486 - 18175 (+)
Gene ID: HRGMv2_2533_1_17
Type: pfam
Location: 18395 - 19363 (+)
Gene ID: HRGMv2_2533_1_18
Type: CAZyme
Location: 19360 - 20430 (+)
Gene ID: HRGMv2_2533_1_19
Type:
Location: 20462 - 21613 (+)
Gene ID: HRGMv2_2533_1_20
Type: TC
Location: 21610 - 23034 (+)
Gene ID: HRGMv2_2533_1_21
Type: pfam
Location: 23036 - 24148 (+)
Gene ID: HRGMv2_2533_1_22
Type: pfam
Location: 24138 - 25127 (+)
Gene ID: HRGMv2_2533_1_23
Type: CAZyme
Location: 25138 - 26193 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2533_1_4 vegetarian > omnivore 1.44905 0.01191
HRGMv2_2533_1_4 vegetarian > vegan 1.27058 0.01497

🧭 Explore Read Mapping of CGC

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