Cluster: HRGMv2_2532_CGC7
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate: host glycan
- Genome ID: HRGMv2_2532
- CGC Family ID: CGCFAM_00311
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2532_5 | HRGMv2_2532_5_35 | 32999 | 33922 | - | 3.A.1.1.29 |
| TC | HRGMv2_2532_5 | HRGMv2_2532_5_36 | 33936 | 34865 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_2532_5 | HRGMv2_2532_5_37 | 35074 | 36954 | - | GH20 |
| pfam | HRGMv2_2532_5 | HRGMv2_2532_5_38 | 36948 | 37829 | - | ROK |
| CAZyme | HRGMv2_2532_5 | HRGMv2_2532_5_39 | 37901 | 40546 | - | GH38 |
| CAZyme | HRGMv2_2532_5 | HRGMv2_2532_5_40 | 40623 | 41903 | - | GH125 |
| CAZyme | HRGMv2_2532_5 | HRGMv2_2532_5_41 | 42074 | 44161 | + | GH92 |
| CAZyme | HRGMv2_2532_5 | HRGMv2_2532_5_42 | 44200 | 45882 | - | GH29 |
| CAZyme | HRGMv2_2532_5 | HRGMv2_2532_5_43 | 45884 | 47557 | - | CBM71 |
| CAZyme | HRGMv2_2532_5 | HRGMv2_2532_5_44 | 47567 | 49672 | - | GH2 |
| peptidase | HRGMv2_2532_5 | HRGMv2_2532_5_45 | 49856 | 50755 | - | I87.UPW |
| pfam | HRGMv2_2532_5 | HRGMv2_2532_5_46 | 50998 | 51855 | + | Acid_phosphat_B |
| TC | HRGMv2_2532_5 | HRGMv2_2532_5_47 | 52489 | 53994 | - | 3.A.1.15.3 |
| TC | HRGMv2_2532_5 | HRGMv2_2532_5_48 | 54004 | 54810 | - | 3.A.1.15.3 |
| TC | HRGMv2_2532_5 | HRGMv2_2532_5_49 | 54803 | 55507 | - | 3.A.1.15.3 |
Gene ID: HRGMv2_2532_5_35
Type: TC
Location: 32999 - 33922 (-)
Type: TC
Location: 32999 - 33922 (-)
Gene ID: HRGMv2_2532_5_36
Type: TC
Location: 33936 - 34865 (-)
Type: TC
Location: 33936 - 34865 (-)
Gene ID: HRGMv2_2532_5_37
Type: CAZyme
Location: 35074 - 36954 (-)
Type: CAZyme
Location: 35074 - 36954 (-)
Gene ID: HRGMv2_2532_5_38
Type: pfam
Location: 36948 - 37829 (-)
Type: pfam
Location: 36948 - 37829 (-)
Gene ID: HRGMv2_2532_5_39
Type: CAZyme
Location: 37901 - 40546 (-)
Type: CAZyme
Location: 37901 - 40546 (-)
Gene ID: HRGMv2_2532_5_40
Type: CAZyme
Location: 40623 - 41903 (-)
Type: CAZyme
Location: 40623 - 41903 (-)
Gene ID: HRGMv2_2532_5_41
Type: CAZyme
Location: 42074 - 44161 (+)
Type: CAZyme
Location: 42074 - 44161 (+)
Gene ID: HRGMv2_2532_5_42
Type: CAZyme
Location: 44200 - 45882 (-)
Type: CAZyme
Location: 44200 - 45882 (-)
Gene ID: HRGMv2_2532_5_43
Type: CAZyme
Location: 45884 - 47557 (-)
Type: CAZyme
Location: 45884 - 47557 (-)
Gene ID: HRGMv2_2532_5_44
Type: CAZyme
Location: 47567 - 49672 (-)
Type: CAZyme
Location: 47567 - 49672 (-)
Gene ID: HRGMv2_2532_5_45
Type: peptidase
Location: 49856 - 50755 (-)
Type: peptidase
Location: 49856 - 50755 (-)
Gene ID: HRGMv2_2532_5_46
Type: pfam
Location: 50998 - 51855 (+)
Type: pfam
Location: 50998 - 51855 (+)
Gene ID: HRGMv2_2532_5_47
Type: TC
Location: 52489 - 53994 (-)
Type: TC
Location: 52489 - 53994 (-)
Gene ID: HRGMv2_2532_5_48
Type: TC
Location: 54004 - 54810 (-)
Type: TC
Location: 54004 - 54810 (-)
Gene ID: HRGMv2_2532_5_49
Type: TC
Location: 54803 - 55507 (-)
Type: TC
Location: 54803 - 55507 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus pseudopneumoniae_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.