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Cluster: HRGMv2_2532_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2532_4 HRGMv2_2532_4_91 88913 90550 - 3.A.1.147.8
TC HRGMv2_2532_4 HRGMv2_2532_4_92 90531 91280 - 3.A.1.147.8
CAZyme HRGMv2_2532_4 HRGMv2_2532_4_93 91456 92910 + GH13_5
pfam HRGMv2_2532_4 HRGMv2_2532_4_94 93000 95618 - tRNA-synt_2c | DHHA1 | tRNA_SAD
pfam HRGMv2_2532_4 HRGMv2_2532_4_95 95640 96125 - LOR
TC HRGMv2_2532_4 HRGMv2_2532_4_96 96801 97871 - 3.A.1.11.7
TC HRGMv2_2532_4 HRGMv2_2532_4_97 97868 98641 - 3.A.1.11.7
TC HRGMv2_2532_4 HRGMv2_2532_4_98 98638 99444 - 3.A.1.11.7
TC HRGMv2_2532_4 HRGMv2_2532_4_99 99425 100582 - 3.A.1.11.7
Gene ID: HRGMv2_2532_4_91
Type: TC
Location: 88913 - 90550 (-)
Gene ID: HRGMv2_2532_4_92
Type: TC
Location: 90531 - 91280 (-)
Gene ID: HRGMv2_2532_4_93
Type: CAZyme
Location: 91456 - 92910 (+)
Gene ID: HRGMv2_2532_4_94
Type: pfam
Location: 93000 - 95618 (-)
Gene ID: HRGMv2_2532_4_95
Type: pfam
Location: 95640 - 96125 (-)
Gene ID: HRGMv2_2532_4_96
Type: TC
Location: 96801 - 97871 (-)
Gene ID: HRGMv2_2532_4_97
Type: TC
Location: 97868 - 98641 (-)
Gene ID: HRGMv2_2532_4_98
Type: TC
Location: 98638 - 99444 (-)
Gene ID: HRGMv2_2532_4_99
Type: TC
Location: 99425 - 100582 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2532_4_98 vegan > omnivore 3.40655 0.01604

🧭 Explore Read Mapping of CGC

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